Lupinus angustifolius (narrow-leaved blue lupine): 109343731
Help
Entry
109343731 CDS
T04664
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03013
Nucleocytoplasmic transport
lang03015
mRNA surveillance pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109343731
09122 Translation
03013 Nucleocytoplasmic transport
109343731
03015 mRNA surveillance pathway
109343731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109343731
03041 Spliceosome [BR:
lang03041
]
109343731
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109343731
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109343731
Spliceosome [BR:
lang03041
]
Complex C
Other components
EJC/TREX
109343731
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109343731
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109343731
NCBI-ProteinID:
XP_019437722
LinkDB
All DBs
Position
LG03:complement(23026493..23030789)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaaaggacgaaggatatgaggaggagcttctcgattatgaggaggaagaa
gacaaagctcccgattccgttggaaccaaagtcaacggtgaagctactaagaagggctat
gttggaattcacagttcaggattcagagattttcttctaaagccagagcttcttcgtgct
attgttgactcgggttttgagcacccttctgaagtgcaacatgagtgcatacctcaagca
attcttggaatggatgttctttgtcaagctaaatctggaatgggaaaaactgctgtcttc
gttctctcatctttgcagcagattgatcctgttccaggtcaagtttctgcgcttgttctg
tgtcacacaagagagttagcataccagatatgccatgagtttgagaggtttagcacctac
ttgcctgatctaaaggttgctgtattttatggtggagtcaacattaaagttcacaaggat
ctgttgagaaatgaatgccctcatatcgttgttggtacccctggaagaatactagcattg
gctagggataaagacctttctttgaagaatgttaggcatttcattttagatgaatgtgat
aagatgctagaatcactagacatgaggaaagatgtgcaagacattttcaagatgactccc
catgataagcaagttatgatgttttctgcaacactcagcaaggaaattcgcccagtctgc
aaaaaatttatgcaagatccaatggaaatttatgttgatgacgaggccaagttgaccctt
catggacttgtgcagcactacatcaagttgaaagaggaggagaagaaccggaagttgaat
gatcttcttgatgccctagacttcaaccaagttgttatctttgtaaaaagtgtcagtaga
gcagctgagctggacaaactactagtggagtgcaacttcccatctatatgcattcactct
ggaatgtcccaggaagaaaggttgaagcgttataaaggttttaaggagggccatacaagg
attcttgtagcgacggatttggttggtaggggaattgacattgagcgtgtcaatattgtt
ataaactatgacatgcccgattctgcagacacatatttgcaccgggttggacgagctgga
agatttggcaccaaaggccttgcaattacatttgtttcatgttcttctgatgtggatgtt
cttaacaatgtccaatcaaggtttgaggtagatattaagcagcttcctgagcagattgat
acatctacctacatgccatcttag
DBGET
integrated database retrieval system
