Lupinus angustifolius (narrow-leaved blue lupine): 109344330
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Entry
109344330 CDS
T04664
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109344330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109344330
03041 Spliceosome [BR:
lang03041
]
109344330
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109344330
Spliceosome [BR:
lang03041
]
Complex B
Other components
Prp19-related factors
109344330
Complex C
109344330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
PKI
Motif
Other DBs
NCBI-GeneID:
109344330
NCBI-ProteinID:
XP_019438614
UniProt:
A0A1J7IJS5
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All DBs
Position
LG03:complement(27993629..28000121)
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AA seq
917 aa
AA seq
DB search
MSISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSESPFKKRFVIYERALKALPGSY
KLWHAYLRERLDLVRNLPITHSHYDTLNNTFERALVTMHKMPRVWIMYLQTLTEQKLVMR
ARRTFDRALCALPVTQHDRIWDPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDRFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMCTVITVRDFSVIFDSYTQFEESML
AYKMEEIDLSDDDEEEEEAEQENDVKEGDEEDIRFKEKSWEDEFEKKILHGFWLNEKNDI
DLRLARLDYLMDRRPELANSVLLRQNPHNVEQWHRRVKLFDGNPAKQILTYTEAVRTIDP
MKAVGKPHTLWVAFAKLYEHHDDLVNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHQ
NFRGALELMRRATAEPSVEVKRKVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTR
AVYERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKF
VKRYGKTKLERARELFENAVETTPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP
NNEKLSMYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDR
ARGIYVFASQFADPRSDPEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPE
YLMQKDQTVNLDDAKDKLKEAGVPEDEMAALERQLAPAVNNSVTKDRKVGFVSAGVESQS
DKGIKTSGNHEDIELPDESDSDDDDDDKIEIAQKDVPDAVFGDLIRKRDENENNGEVDGA
NDTKLGALERIKRMKRN
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttcacaagaactgtacccctcccaagacgatctcctctacgaagaagaactt
ctccgaaaccctttcagcctcaaactatggtggcgctacctcattgctcgttccgaatct
ccattcaagaaacgtttcgtaatttacgaacgtgccctcaaagctctccctggtagttac
aagctttggcacgcttaccttcgtgaacgcctcgatctcgttcgaaaccttccaattact
cactctcactacgatactctcaacaacacgttcgagcgtgctctcgttacgatgcataag
atgcctagggtttggattatgtatcttcaaaccctaacagaacagaaattggttatgaga
gcgaggaggacatttgatagggcgttatgtgcactcccggtgacgcagcatgatcgaatt
tgggacccttatcttgttttcgtgagccagaagggtattccgatcgaaacgtcgttgagg
gtttatcgaaggtatttgaagtatgatccttctcatattgaggattttattgagtttttg
gttaattctagtttgtggcaagaggctgctgagaggttagcgtctgttttgaatgatgac
cggttttattcaattaaggggaagacgaaacataggctgtggttagagttgtgtgatttg
ttgactaggcatgcgaatgaggtgtccgggttgaatgtggatgccattattaggggtggg
ataaggaagttcaccgatgaggttggtcggctctggacttctttggctgagtattatatt
aggaggggtttgcatgagaaggcgagggatgtgtttgaggagggtatgtgtactgtcatt
actgtgagggattttagcgttatctttgattcttacacgcagtttgaagagagcatgctt
gcttacaagatggaggagattgatctgagtgatgatgacgaggaagaagaagaagctgag
caagaaaatgatgttaaggagggggatgaagaagatattcgttttaaagaaaaatcatgg
gaggatgagtttgagaagaagattttacatgggttttggttgaacgagaaaaatgatatt
gacttgagattggctcggttggattatcttatggataggaggccagagttggctaatagt
gtgcttttgcgccaaaatcctcataatgtagaacagtggcaccgtagggtgaagcttttc
gatggtaatcctgccaaacagatactgacttacacggaagcagtaaggacaattgatccc
atgaaagcagtgggaaagcctcatactttgtgggttgcatttgctaaactgtatgagcat
catgatgatcttgtgaatgctcgggtcatatttgacaaggcagttcaagtgaactacaaa
actgtggataatcttgctagtatctggtgtgagtgggcagaaatggagttgagacatcag
aatttcagaggagcgctggagcttatgaggcgggctacagcagagccatcagttgaggtc
aagcgaaaagtggctgctgatgggaatgaaccagttcagatgaagctgcataaatctttg
agattgtggactttctatgttgatttggaggaaagcctgggtactttggagtctactcga
gctgtttatgagcggatattggatttacgaatagccacaccccaaataattatcaactat
gcatactttctggaggagcataaatactttgaagatgcttttaaagtttatgaaagagga
gtgaagatatttaagtacccacatgttaaagacatatgggtgacatacctgtctaaattt
gtgaagagatatggaaagacaaaattagagagagcaagagagctatttgagaatgcggtt
gaaacgacacctgctgatcaagtgaaacctctctatttgcaatatgctaagctggaggag
gactatggactagcaaagcgagctatgaaggtttacgatcaagcaaccaaggcagtccct
aacaatgagaagttaagcatgtatgaaatatatattgctcgcgcagctgagatatttggt
gtacccagaactagggagatctatgagcaggcaattgaatctggtcttccagacaaggat
gtcaaaactatgtgtttgaagtatgctgagctagaaaaaagcttgggagaaattgatcgg
gcccgtggaatatatgtgtttgcctctcagtttgcagatccacggtctgatccagaattt
tggaacaagtggcatgagtttgaggttcagcacggaaatgaagataccttcagagaaatg
cttcgtattaagcggagtgtctctgcaagctacagccagacacattttattttacccgaa
tatctaatgcaaaaggatcaaaccgtaaatctggatgatgccaaagacaaattgaaagag
gctggggtccctgaggatgaaatggctgctttggaaaggcaattagccccagcagttaac
aattcagtgacaaaagatagaaaggtcgggtttgtgagcgccggagtggaatcacagtct
gataaagggataaaaacaagtggaaatcacgaggatattgaattaccagatgaaagtgac
tctgatgatgatgatgatgataagattgaaattgcacaaaaagatgtccctgatgctgtt
tttggtgatttgattcgaaagagagacgaaaatgagaacaatggggaagtggatggagct
aatgacactaagcttggtgctcttgagagaataaagaggatgaaacgaaattaa
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