Lupinus angustifolius (narrow-leaved blue lupine): 109346450
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Entry
109346450 CDS
T04664
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109346450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lang03021
]
109346450
03019 Messenger RNA biogenesis [BR:
lang03019
]
109346450
Transcription machinery [BR:
lang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109346450
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109346450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
109346450
NCBI-ProteinID:
XP_019441558
UniProt:
A0A4P1RKV5
LinkDB
All DBs
Position
LG04:complement(24521124..24527491)
Genome browser
AA seq
978 aa
AA seq
DB search
MYSQNLILTAENPRHSAAFQQPLPPATAKALMSNENIAQKPPPSILVGRFKALLKQRDDE
LRDFPGAPVPPPTTDEIVEIYEMLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICAR
ILEVPVDQKLPALYLLDSIVKNYGQEYVRYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGT
WSKVFPPSALRKIEAQLQFSQAVNNQSSTMNSLRASESPRPSHGIHVNPKYLRQLDRSTV
DSVGGEKLDSSGKASNTNFGLVASKTQQYVSSRIGMSSSPSRIGIDRSLSASIDEYAVGN
SAARIVERESPRPSVDYGITKALGRDEELSEWQLKQYSGDGLNRFQTSMTHSLINGHQRQ
SPRALIDAYGCDKSHETSSNKRLLVERLDRNGKDKVLSTSWQNTEEEEFDWEDMSPTLVD
HSRISGLLPSTIGFPRERPGIIAGNATSPEQDIRKGWSSGSQLPPVDDSSVTAEDTFPSS
AHGHVFVGQISGFQNQINQSLGSCQPREAWKISHHPSNSSQYLFNIRGQPRSLLMPPTDN
VPSTNEIPFGIRPAVSRISGLASNMEIRPPVLPASFDIRPSVNLHATRPPTLNPIFPLPS
HFRSQFEAMNTSNPIVNHGPSKSPNMTEQFLDSAENKDTGKANIHQLPNHFAGLISPNQQ
NHGQVSQLQFFPPRDPSVPPYSHGSSFRGRGAPLSTAMSNPMSVLQFPLPAQGVANNSLH
FQPGSHPPLPPGRPCAPSQMMLHPNASPFMPNQQPTAAYSNLINSLMSQGMISLGNQLPP
QDSVGTEFNPDILKLRHESAINALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSK
NRKQKPSRKWFVSDRMWLSGAEALGAESVPGFLPTEVVDEKKDDDELAVPAEEDQNTCAL
CGEPFDEFYSDEMEEWMYRGAVYLNAPTGTTPGMDRSQLGPIIHAKCRSESTVSPSEDFA
LDAGGANEEGSQRKRMRS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtactctcagaatttgatactcaccgcagaaaaccctagacactcggcggcgtttcaa
cagccactacctccggccactgcgaaagccctcatgagcaatgagaatatcgcgcagaag
cctcccccttcgattctcgtgggtcgcttcaaggcactgctcaagcagcgtgacgacgaa
cttagggattttcccggtgcccccgtgccgccacctaccaccgacgaaattgttgagatt
tacgagatgctgttgtcggagctcacgtgcaatttgaagcctattatcaccgatctcaca
atcattgctgaacagcagagggaacacgctaagggtattgctgatgcaatttgcgctcgg
attctcgaggtgcctgtggatcaaaagttacctgcactctatcttttggacagtattgtg
aagaattatggtcaagaatatgttagatacttctctttacgtttgccagaagttttctgt
gaggcatataggcaagtccagcctagtttgcatcctgctatgcgccatctgtttgggacg
tggtcaaaagtcttcccaccttctgccctacgcaagattgaagctcaattgcaattttct
caagctgttaataatcaatcatctaccatgaattccctcagggcatctgaatctcctcga
cctagtcatggcattcatgttaatccaaagtacttgcgacagttagatcgctcaactgtg
gatagtgttggtggtgaaaagttggactcatcaggaaaggctagcaatacaaattttggt
cttgttgccagtaagacacaacaatatgtatctagcaggattggaatgtcctcttcacct
tcaagaataggtattgataggtctttgtctgcttctatagatgaatacgcagttggcaat
tctgctgccaggatagtcgagagagagtctcctcgtccatctgttgattatggaataacc
aaagcattgggtagagatgaagagttgagtgaatggcagctaaagcagtattctggcgat
ggtctaaatcggtttcaaacttcaatgacacacagccttattaatggacatcagcgtcaa
agtccaagagcactgattgatgcgtatggatgtgacaaaagccatgaaacttcaagcaat
aagcgtttgttagttgaacggctggacagaaatggtaaagataaggtgttgtcaacatca
tggcagaatactgaagaggaggagtttgattgggaagatatgagtccaacattagtagac
catagtaggattagtggtttgttgccatcaacaattggtttccccagggaaaggcctggt
attattgcaggtaatgcaacttcgccagagcaagatatcaggaagggttggtctagcggg
tctcagcttcctccagtggacgattcttctgttacagcagaagacacatttccttcttcg
gctcatggccatgtctttgtgggtcagatatctggtttccaaaatcaaataaatcagagt
ctggggtcctgtcaacctcgtgaagcttggaagatttctcatcatccatctaattcttca
caatacttatttaatattagaggacaaccaaggagtcttttgatgccccctactgataac
gttcccagtacaaatgaaatcccatttgggattcgacctgcagtgtcaaggatttctggt
cttgcctccaatatggagattcgtccaccagttttaccggcatcttttgacataaggcct
tcagtaaatctgcatgccactcgtcctcccaccttaaatccaatatttccattgccaagc
cattttaggagtcaatttgaagctatgaatacaagtaaccccattgtgaatcatggtcca
agtaaatctccaaatatgactgaacagtttctggacagtgctgagaacaaggatacaggt
aaagcaaatatacatcagttgcctaatcattttgctggactaatttcacccaaccagcaa
aaccatggacaagtatcacaactgcagttttttccacctcgggatccatctgtcccacca
tatagtcatggaagctctttcagaggacgtggtgctcctctaagtacagccatgtcaaat
ccaatgtctgttttacaattccctttaccagcccaaggtgttgcaaataactccttacat
tttcaaccgggatcccatcctcctctacctccaggtcgtccttgtgctccatcacaaatg
atgcttcatccaaatgctagtccatttatgccaaatcaacagccaactgctgcatattct
aatttaattaattcactaatgtctcaaggcatgatctcattgggtaaccagctccctcca
caggattctgttggaactgagtttaatccagatattctgaagcttcgtcacgaatctgct
atcaatgctttatatggtgatctccctagacaatgcaccacttgtgggctacgattcaaa
tgccaagaggagcacagtagtcatatggactggcatgtgaccaagaaccggatgtctaaa
aaccgtaagcagaagccatctcgtaagtggtttgtgagtgacaggatgtggcttagtggt
gcggaggctttgggagcagaatcagttcccggttttttgccaactgaggtagtagatgaa
aagaaagatgatgatgagttggcagtaccagctgaagaggaccaaaatacatgtgcatta
tgtggagagcctttcgatgagttttacagtgatgaaatggaggaatggatgtatagagga
gctgtatacctcaatgcacccacaggaacaacacctggcatggacaggtcacagttaggg
cccattattcatgctaaatgcagatcagaatctactgtgtccccctctgaagattttgca
ctggatgcagggggtgccaatgaagagggtagtcaaagaaaacgcatgcggagttga
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