Lupinus angustifolius (narrow-leaved blue lupine): 109347457
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Entry
109347457 CDS
T04664
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109347457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109347457
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109347457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
DUF4845
Motif
Other DBs
NCBI-GeneID:
109347457
NCBI-ProteinID:
XP_019442868
LinkDB
All DBs
Position
LG05:complement(2641183..2657420)
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AA seq
853 aa
AA seq
DB search
MNVDHNQPHTNSHTLQTLTTAPISSSISNLSSSDRDFKFYTNFNEFKLPVNEISKESQFM
LQSIGASIAKDSAFPVDVDEAYDWVVDVNDDVLERFDISADEFRKVRMDEEEVVVREGAN
SAMEDDGFTLVCRNKKKNGGRNYDSSEKVVIDSETSVKVTMKDKKTIGPKSKVPFHIPTI
RRPQDEYTIMVNNSNMPFEHVWLERSGDGQRVIHPLEKLSVLDFVDKEPGNVVPVKPPPL
ESTPFRLVEDVKSLKELAAKLRSAHEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTL
KLRVHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASKVLKLERNS
LEYLLRHFCEITANKEYQNADWRVRPLPDEMLRYAREDTHYLMYIYDLMRIDLFALSKKS
ESSDDSLLEVYEHSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQLAIVSGLCEWRDI
VARSVDESTGYILPNKAVLEIAKQMPVTTIKLLRLVKSKHPFVERNLDSVLEIIKHSIQN
AAAFEEAAQQLSEGNASTSSDVVPVKDRTEDPQLHTQDSKESSQHQDINVLVKIKSPSFT
LSKAKENRGSIEVLKQPTGAFGALLGSSASKRKLNPENKDNEDVKLQQFRSSVNLPFHSF
LGGTQVSKPVVKSPSLASETSNPQKPVPVHVSTSTLDEIIILESDTAVEDMEQNNVENSN
DHREINSNVSTSGKEDEVEPMSLSELSSSFQKCFQSNNQNIKTRLLKKTEQVGGLLQLKP
FDYEEAMKHVKFGENKKHASFQNDGDVGRDDSGSKKKHSTTGQEQTTDLTKQLQQGRRRQ
AFPASGNRSATFR
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgatcacaaccaacctcacacaaattcacacactctacaaaccctaacaaca
gctccgatttcctcttcaatttcaaacctctcttcttccgatcgtgatttcaaattctat
accaatttcaacgaattcaagctccctgttaacgaaatctcgaaggaatcacagtttatg
cttcaatcaatcggtgcttcaatcgcgaaggattcagcattccctgttgatgtagacgag
gcttatgattgggttgtggatgtaaacgacgacgttttggagcgatttgatatctctgct
gacgagtttcggaaggttaggatggatgaggaggaagtggtagtgcgtgaaggggcgaat
tcggctatggaagatgatggttttacgttggtttgtaggaataagaagaaaaatggaggg
aggaattatgattcttcggagaaagtggtgattgattcggagacaagtgttaaggttaca
atgaaggataagaagacgattgggccgaaatcgaaggttccgtttcatataccgacgatt
aggaggcctcaggatgagtataccataatggttaataattcaaacatgccttttgagcat
gtctggttggagaggagtggtgatggtcagagggttattcatccattggagaaactctca
gttttggattttgttgataaggaacccgggaatgttgtgccagtgaaacctcccccatta
gagagcacccctttcaggcttgtggaggatgtcaaaagtttgaaggagttggctgctaag
ctgcgttctgctcatgaatttgcggttgacttggaacataatcaatatcgttctttccaa
ggtttgacttgcctgatgcaaatctcaacaaggactgaagattttgttgtagacactttg
aaacttcgcgttcatgttgggccctacctaagggaagtgttcaaagaccctgcgaagagg
aaggtcatgcatggtgcagatcgagatgttgtgtggcttcaacgagattttggcatttac
atttgtaatctgttcgacactggccaggcttcaaaggtgttaaaattggagagaaatagt
ttggagtatcttctgcgtcacttctgtgagattactgcaaacaaagagtaccagaatgca
gattggagagtacgacctcttcctgatgagatgctaagatatgccagagaagatacacat
tatcttatgtatatatatgatttgatgaggattgatttatttgcattgtctaagaagtct
gaaagttctgacgattctctgttggaggtttatgagcacagttatgatgtctgcatgcag
ctctatgagaaagaacttctgacagagaactcctaccttcatatatatgggttgcaagga
gctggttttaatgctcagcagcttgccattgtttctggtctctgtgaatggcgggacatt
gtcgcgcgttcagtggatgagagtactggatatatactgccaaataaagctgttcttgaa
atagctaagcagatgcccgtgactacaatcaaactactgcgtttggtaaagtcgaagcac
ccctttgttgaacgcaatcttgatagtgtccttgagatcattaagcattctattcaaaat
gctgctgcctttgaagaagctgctcagcaattgagtgaaggaaatgcttctacttcatca
gatgttgtaccggttaaagatagaactgaagacccccaactccatacacaagactcaaag
gaatcctctcagcatcaagatataaatgtcctagtaaaaattaagtcccctagtttcaca
ctctcaaaagcaaaggaaaatagaggaagtattgaggtgctaaaacagcctactggtgct
tttggcgcactgctggggagttcagcttccaagaggaagcttaatcctgaaaacaaggac
aacgaagacgtcaaactacagcagtttagatcttcagttaatcttcctttccattcattt
ttgggtggcactcaggtatcaaaacctgttgtaaaaagtcctagtttggcatcggaaaca
tcaaacccacaaaaacctgttccagttcatgtttccacctccactttagatgagattata
attctagagtcggatacagctgtggaggatatggagcagaataacgtagaaaactctaat
gatcacagagagataaattccaatgtgtccacttcgggaaaagaggacgaagttgagcca
atgtctctttccgaattgtcatcgagctttcagaagtgctttcagtcaaacaatcaaaat
atcaaaacaagactgctcaagaaaactgaacaagttggtggcttattgcagctgaagcca
tttgattatgaagaggcaatgaaacatgttaagtttggagaaaacaaaaaacatgcatca
ttccagaatgatggtgatgtgggacgagacgactcgggtagtaagaagaaacattcaaca
acaggacaagaacaaacaactgatttgacaaaacaattgcagcaaggtagaagacgtcag
gcatttccagcatctgggaatcgaagtgcaacgttccgctga
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