Lupinus angustifolius (narrow-leaved blue lupine): 109348015
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Entry
109348015 CDS
T04664
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109348015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109348015
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109348015
mRNA degradation factors
5'-3' decay
Decapping complex
109348015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
109348015
NCBI-ProteinID:
XP_019443736
LinkDB
All DBs
Position
LG05:complement(20344018..20345783)
Genome browser
AA seq
469 aa
AA seq
DB search
MLGLPEVRDHRPKSSLRGKRSLRFSKQGSDASSQKSDSISLQFRSKHMTSDEIASVLRTQ
HAVTHSNDPYMDDYYHQACLEKKHSLAKLKNPFCPTQIRDLPSRSRSNSETHAFLQVDAL
GRVLFSSIRRPRPLLEIDPQNYSFAGSSEQNVSEKTLEQEPLFAARVTIEDALCLLLDVD
DIDRFLQVNQLPDGGTQLRLRRQVLLEGLATSLQLVDPLGKNGNKVGLVAKDDLVFLRLV
SIPKGRKLLTKYLQLLLPGSELMLIVCMAIFRHLRFLFSGLPSDSAASEFTSNFIKVVCQ
CIKGMDIGALSACLAAVVCSAEQPPLRPLGNTSEDGASIILVSVLERATEILTDPHAACN
YNTGNRSFWQDSFDEFFGFLTKHCMNKYNSIMQSLLKQSAIDLDDIESDAAKAISKEMPV
ELLRASLPHTDDRQRKLLLDFAQRAVPVVRFSSSAGDSGNHRSSGTVLS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcttggtcttcccgaggtcagagatcatagaccgaaatctagtctaaggggtaaacgt
agtcttcgtttctccaagcagggttctgatgctagtagccaaaagagtgatagtatttca
ttacagttcaggtcgaagcatatgacaagtgatgaaattgcgagtgttcttagaacacag
catgccgtgactcatagtaatgacccatacatggatgactattaccaccaagcatgtctt
gaaaaaaagcattctttggctaagttgaaaaatccattttgcccaacccaaataagggac
cttccttcacgatcccggtctaattctgagacacatgctttccttcaggttgatgctcta
gggagggttttattctcatctatccgtaggcctcgccctcttcttgagattgatccacaa
aattattcctttgctggtagctctgagcaaaatgtttcagagaagacccttgaacaggag
cctttgtttgcagccagagtcacaatcgaggatgctctttgtcttcttcttgatgtagat
gatattgaccgtttcctacaggttaatcagctgccggacggtggaactcaattaagacta
agacggcaggtcctgttggaaggactggcaacttcacttcaacttgttgacccactggga
aagaatggaaataaagttggccttgtagctaaggatgatctcgtttttttgcgattagta
tcaattccaaagggtcgtaagctccttactaagtatcttcagttgcttcttcctggtagt
gaacttatgctgatagtctgcatggccatctttcgccatttaagattcttatttagtggt
ctcccctcagattcggcagcttctgagttcacaagtaattttatcaaggttgtttgtcaa
tgtatcaaaggaatggacattggtgctcttagtgcttgtcttgctgcagtggtttgttcc
gcagagcagcctcctctacgccccctcggaaatacttcggaagatggtgcttcaattatt
ttggtttctgttctcgagagggctactgaaattctaactgaccctcatgctgcttgcaac
tacaacacaggtaatcgctcattttggcaggactcatttgatgaattctttggctttctc
accaagcattgtatgaataaatacaatagtatcatgcaatccttgcttaaacaaagtgca
atagatttggatgacattgaatcagatgctgctaaagctattagtaaggaaatgcctgtt
gaacttttgcgtgcaagtcttcctcacaccgatgaccgtcagaggaagttattactggat
tttgctcagcgcgctgtgcctgtggtcagatttagcagtagtgctggggatagtggtaat
cacaggagctcagggacagtgctaagttga
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