Lupinus angustifolius (narrow-leaved blue lupine): 109348016
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Entry
109348016 CDS
T04664
Name
(RefSeq) uncharacterized LOC109348016
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109348016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109348016
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109348016
mRNA degradation factors
5'-3' decay
Decapping complex
109348016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
109348016
NCBI-ProteinID:
XP_019443737
UniProt:
A0A1J7IBZ2
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Position
LG05:complement(20356630..20364243)
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AA seq
817 aa
AA seq
DB search
MDAFGDGPPNPQNSKQVGDYPSEGEVFDASQYDFFGNNFVEEIELGGLEDEEGELAPVEF
DEEEEIFFNREEAEDIRSISEVDDLSATFSKLNKGVISGSRSTGLVGEHGSRENSSAAEW
THRGDIFNFCEQHDYDTDGGQDIKRWSSQPHTSLAQLQESNDLYRTSSYPEQQQHQQLSS
EPIMVPKSSFISYPHSGGRSQHASPNQSPGHLNIPYGASGSQMLFSSPNGSHLSNPQIPF
TGLNHGSPLGGNMHRFASGSPVNNQMPNQWVNQGELYPGDHPKIMNNLLQQQLPLRNGSI
PPHLMLQQSQHRMHHPSQPSTGYLQGLQSHLSNPNISSGFPMINKYDQMLGMMELRNQIP
KLAQRGRQNLHYSPQGFDMSNHRSNSGWPRFRSKCMMTEEIENILRMHLAATQSNDPYVD
DYYHQACLAKKSSGAKLKHHFCPNQIREHPLRASDNNEPHAFLQVDALGRVPFSSIRRPR
PLLEVDPPNSLPTRNTDQNISEKPLEQEPLLAARVTIEDGLCSLLDVDDIDRFLQFNQLQ
DGGIHLKQKRQGLLEGLAASLQLVDPLGKSGHSVGLDAKDDLVFLRIVSLPKGRKLLAKY
LQLLFQGGDLMRIVCMAIFRHLRFLFGALPSDPVAAETVSNLARVVAKCIHEMDLGALSI
CLASVVCSSEQPPLRPLGSSAGDGASLVLVSVLERATELLTDPHAANNYNITNRSLWQAS
FDSFFGLLTKYCVNKYDSVMQSLLIQGTPSMAVIGSDAARAISREMPVELLRASLPHTDD
RQKKQLLDFAQRSMPVVGFNSNSGCNGSHLNSESVPS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgtttggtgatgggcccccgaaccctcagaattcgaagcaagtcggagattat
ccctctgagggtgaagtatttgatgcatcacaatatgacttctttggcaataattttgtt
gaggaaatcgagttgggaggtttagaagatgaagagggtgaattggctcctgttgaattt
gatgaagaggaagagatttttttcaatagagaagaggctgaggatataagatctatttca
gaggttgatgatctcagtgccactttttcaaagttgaacaagggtgttattagtgggtca
agaagcacaggactagttggtgaacatggatcaagagaaaattcatctgctgctgaatgg
acacataggggtgatattttcaatttttgtgagcagcatgattatgacactgacggtggt
caggatatcaaaaggtggtcatcacaaccacatacttcattggctcagttacaagaatca
aacgacttgtatagaacatcttcatatcctgagcagcaacaacatcaacaactttctagt
gaaccaattatggtgccgaagtcatcttttatttcttatcctcattctggtggtaggtcc
caacatgcttcaccaaatcagagtccaggccatttaaacattccatatggtgctagtggg
tcccaaatgctgttttcttcacctaatggctcccatttatccaatccccagattccgttc
actggcctgaaccatgggtctcctcttggtggaaatatgcatcggtttgctagtggttcc
cctgttaataatcaaatgccaaaccaatgggtcaaccaaggggaattatatcctggagat
catcccaaaattatgaacaatttattgcagcaacagttaccccttcgtaatggatcaata
cctccacatttgatgttgcagcaatcacagcatagaatgcaccatccttctcagccttca
acaggctatttacagggtttgcagtcacatctatctaatcccaatatttcatcaggtttc
cctatgattaacaaatatgaccagatgcttgggatgatggaactaaggaatcaaatccca
aaattagctcaaaggggtagacagaatctccattactcccctcagggttttgatatgagt
aaccataggagcaatagtgggtggccccgatttagatccaagtgtatgatgaccgaggaa
attgagaatattcttagaatgcatctcgcagcaacacaaagtaatgatccgtatgtagat
gattattaccaccaagcctgtcttgcaaagaaatcttcaggtgctaaattgaagcatcac
ttttgtccaaatcaaataagagaacaccctctacgagcctctgataataatgaaccacat
gcttttcttcaggttgatgctctagggagggttccattctcatcaattcgcaggccccgt
cctctactggaagttgatcctccaaattccttgcctacccgtaacactgatcaaaacatt
tcagagaagccccttgaacaggagccactgcttgcagccagggtcacaattgaggacggt
ctttgttctcttctcgatgtagatgatattgatcgttttctacagtttaaccagcttcaa
gatggtggaattcatttaaaacagaaacggcagggtcttctagaaggacttgcagcctct
cttcaattggttgatccacttggaaagagtggacactcagtagggctagatgcgaaggat
gatcttgtttttctcaggatagtttctctacccaagggccggaagctacttgctaagtac
cttcaattgctttttcaaggcggtgatcttatgcgaatagtctgtatggccatctttcgc
catttaagattcttatttggtgcccttccctcagatccagttgcagcagaaactgtaagt
aaccttgcaagggttgttgcaaagtgcatccatgaaatggatctaggtgcactaagtatt
tgtctagcatctgttgtttgctcttctgagcagcctcctctacgcccccttggaagctct
gctggagatggggcttcccttgttttagtgtctgtgcttgaaagggctactgaactttta
actgatcctcatgctgccaacaactacaatattacaaatcgctcactttggcaggcctcg
tttgattcattctttggtcttctgactaagtattgcgtgaataaatatgatagtgtcatg
caatcactgcttattcaagggacaccaagtatggctgtcattgggtcagatgctgctaga
gctatcagtagggaaatgccagttgagctcttacgtgcaagtttaccacacactgatgat
cggcagaaaaagcaattacttgactttgctcaacgttcaatgcctgtagttggatttaat
agtaattctgggtgtaatggcagccatctaaattcagaatcagtgccgagttaa
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