Lupinus angustifolius (narrow-leaved blue lupine): 109349048
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Entry
109349048 CDS
T04664
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03013
Nucleocytoplasmic transport
lang03015
mRNA surveillance pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109349048
09122 Translation
03013 Nucleocytoplasmic transport
109349048
03015 mRNA surveillance pathway
109349048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109349048
03041 Spliceosome [BR:
lang03041
]
109349048
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109349048
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109349048
Spliceosome [BR:
lang03041
]
Complex C
Other components
EJC/TREX
109349048
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109349048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109349048
NCBI-ProteinID:
XP_019445240
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All DBs
Position
LG01:7826446..7832285
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AA seq
426 aa
AA seq
DB search
MGELKDTEAYEEELIDYEEEDEKAIDSSKPAAESGKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLC
HTRELAYQICHEFERFSTYLSDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALA
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQQIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaggacacagaagcttacgaggaagagctcatcgattacgaagaggaa
gatgaaaaagccattgattcttctaaacccgctgctgaatctggcaaaaagggttatgtt
gggatccatagttcgggatttagagacttcctgttgaaacctgagctccttcgagccatc
gtggattcaggattcgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatt
cttggaatggatgtcatttgccaagcaaaatctggaatggggaagactgcagtgtttgtt
ctttcaacacttcagcaaattgatcctgttgctggtcaagttgcggctcttgttctttgc
cacacaagagaactagcttatcagatttgccacgaatttgagaggttcagcacatatctt
tcggatataaaagttgctgttttctatggtggtgttaacatcaaggttcacaaagatttg
ctcaagaatgaatgtcctcatattgttgttgggacacctgggaggattcttgctttggcc
agagataaggaccttggtttgaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctcgaatcacttgacatgagaagagatgtgcaacagatttttaaattaactccacat
gataagcaagtaatgatgttttcagctacactcagcaaagagatccgacctgtttgcaag
aaatttatgcaagatcccatggaaatttatgtagacgatgaggcaaaattgactcttcat
ggtctcgtgcagcactacattaaattgcaagagtcagagaagaatcgtaagttgaatgat
cttcttgatgctctggactttaaccaagtggttatctttgtcaaaagtgtcagcagagca
gcagagttgaacaagttgcttgtggagtgcaacttcccatcaatctgcatacattctgga
atgtcacaggaagaaagattgaaacggtacaagggctttaaagaagggaagcagaggatt
cttgtagcaactgatttagtaggaagggggattgacatagaacgtgttaatatagtcatc
aactatgacatgcctgattctgctgatacctacctgcatagggtgggaagagctggtaga
ttcggcaccaaggggcttgcaattacttttgtttcatctgcctctgactctgaagttctc
aatcaggtacaatcaaggtttgaggttgatataaaggagcttcctgagcaaattgacact
tccacatatatgccgaactaa
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