Lupinus angustifolius (narrow-leaved blue lupine): 109349874
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Entry
109349874 CDS
T04664
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109349874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109349874
03041 Spliceosome [BR:
lang03041
]
109349874
03009 Ribosome biogenesis [BR:
lang03009
]
109349874
03016 Transfer RNA biogenesis [BR:
lang03016
]
109349874
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109349874
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109349874
Spliceosome [BR:
lang03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109349874
Complex C
U4/U6.U5 tri-SnRNP related factors
109349874
Ribosome biogenesis [BR:
lang03009
]
Eukaryotic type
Pre-60S particles
Helicases
109349874
Transfer RNA biogenesis [BR:
lang03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109349874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Cas_Csm6_HEPN
Motif
Other DBs
NCBI-GeneID:
109349874
NCBI-ProteinID:
XP_019446453
LinkDB
All DBs
Position
LG06:11931591..11940066
Genome browser
AA seq
982 aa
AA seq
DB search
MENNESPTLGKRKEPEPESKPQSEPAPESKPPTNPKNSRTCVHEVAVPSGYHSNKDEAIH
GTLSSPLFNGSMAKSYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTVVAEYAIAMSFR
DKQRVIYTSPLKALSNQKYRELSGEFNDVGLMTGDVTIAPNATCLVMTTEILRGMLYRGS
EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIH
KQPCHVVYTDFRPTPLQHYAFAMGGSGLYLVVDENEQFREDNFMKMEDTFVKKKLEGNKG
ARSNGRGGKGGSGGGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQE
EKDTVEHIFHSAILCVNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVEILFQEGL
VKALFATETFAMGLNMPAKTVLFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMVDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQ
YEKTLPDMGQRVSKLEQEVALLDASGEAEVSEYHKLELEIAQLEKKMMEQIMRPENVLLY
LLPGRLIRIREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPGSNGNNTRPKPCPPRPG
EKGEMHVVPVQLALISSLSKLKVFIPSDLRPLEARQNILLAVQELGNRFPQGFPKLNPVK
DMKIKDPEIVEFVNQIEELEQKLFSHPMHKHQDVDQIKCFQRKAEVSHEIQQLKAKMRDS
QLQKFREELKNRSRVLKKLGHIDADGIVQLKGRAACLIDTGDELLVTELMFNGTFNELDH
HQVAALASCFIPGDRSSESQIQLRTELARPLQQLQDSARRIAEIQHECKLEINVDEYVES
TVRPFLMDVIYSWSKGASFGDVIQMTDIFEGSIIRSARRLDEFLNQLRAAADAVGEVDLE
KKFAAASESLRRGIMFANSLYL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggagaataacgaatctccaacactaggaaagagaaaggaacccgaacctgaatccaaa
cctcaatccgaacctgcaccagaatccaaacctcccacaaaccctaagaattctcgcacc
tgcgtccatgaagtagcggttccgagcggttaccattcgaacaaagacgaagcaatccat
ggaactctctcgagccctctcttcaatggttcaatggctaagtcctatcccttcaccctc
gaccccttccaacaagtctccgtcgcgtgcctcgaacgcaacgagtccgtcctcgtctcc
gcccacacctccgccggaaaaaccgtcgtggccgagtatgccatcgcgatgtcgttccgt
gataagcagcgcgtgatctacacctccccgctcaaagccctgagtaatcagaagtaccgt
gagctcagcggcgagttcaatgacgttggactcatgaccggagacgtcacgatagcgccg
aatgctacttgtttggttatgaccactgagattctcaggggaatgctttatagaggaagt
gaggttttgaaagaagtggcttgggttattttcgacgagattcattatatgaaggatagg
gaaagaggtgttgtttgggaagagagtattatttttttaccacctgctattaagatggtt
ttcctttctgctacaatgtcgaatgccaccgagttcgctgagtggatttgtaatattcat
aagcagccttgtcatgttgtgtacactgattttcggccgactccattgcagcattatgct
tttgctatgggtgggagtgggttgtatttggtggttgatgagaatgagcagtttcgggag
gataattttatgaaaatggaagatacttttgttaagaagaaattggagggtaacaagggt
gctagaagcaatggcagaggtgggaaaggtggttctggaggtggtggttctgacatatac
aagattgttaagatgattatggaacggaaattccaacctgtaatcatctttagcttcagt
cggagagagtgtgaacagcatgcgatgtctatgtccaagcttgacttcaatacccaagag
gaaaaggatacagtggagcatatttttcatagtgcaatactctgtgtgaatgaagaagac
aggagcttacctgctattgagctaatgttgccactccttcaaagaggaattgctgtccat
cattctggccttcttcctgttatcaaagaattggttgagattcttttccaggaaggcctt
gttaaggccctatttgccactgagacatttgcaatgggtttaaatatgccagcaaaaact
gttctgttcacagctgttaagaagtgggatggtgatagtcaccgttatattggatctggt
gaatatatacagatgagtggaagggctgggcgtcgtggcaaggatgagcgtggaatttgt
atcataatggttgatgagcaaatggaaatgaacaaccttaaggacatggttctgggtaaa
cctgctcctttagttagtacgttcagacttagctactattcgattttaaatttgatgagc
cgtgcagaaggccaatttactgctgagcacgtaataaaaaattcatttcatcagtttcaa
tatgaaaagaccttacctgatatggggcaaagggtgtcaaagctggagcaggaagtagcc
ttgcttgatgcttcaggcgaggccgaagtatctgaatatcataagctagaactggaaata
gcgcagcttgagaagaagatgatggaacaaataatgaggcctgaaaatgttcttttatat
cttctccctggccgattgattagaataagagaaggtggaactgattggggctggggtgtt
gttgtcaatgttgttaagaaaccttctggtggtggttatatagttgatacattacttcat
tgttcacctggttcaaatggaaacaatacacggccaaaaccttgtccaccccgccctgga
gagaaaggtgaaatgcatgtggtccctgttcaattagcattaatctcttcccttagtaaa
cttaaggtatttataccttctgaccttcggcccttggaagcaaggcaaaacatactgctt
gctgttcaggagctgggcaatcgttttcctcaaggttttccaaagcttaaccccgtaaag
gacatgaagataaaagaccctgagatagttgagtttgtcaatcaaatagaggaacttgag
caaaagttgttttcccatcccatgcataagcatcaagatgtcgaccaaattaaatgcttt
cagaggaaagcagaagtgagtcatgaaattcaacaactgaaggcaaaaatgcgggattcc
cagctacaaaaatttcgcgaagagcttaagaatcgctcacgagtcttaaagaagcttggt
catattgatgctgatggtatagttcagttgaaggggcgggcggcctgtttgattgacaca
ggcgatgaactccttgtcactgagttgatgtttaatggtacttttaatgaacttgaccac
catcaagttgctgcccttgcaagttgttttataccaggagatagatctagtgagtctcag
atacaactgagaacagaactcgcaagacctctacaacagcttcaagacagtgcaagaagg
atagcagagatacaacatgaatgcaaattggaaataaatgtggacgagtatgtggagtca
acagtaaggccattcctgatggatgtgatatactcctggtcaaagggagcaagttttgga
gatgttatacaaatgactgacatctttgaggggagtatcattaggagtgctagaaggctt
gatgagtttttgaatcagctgcgagctgctgctgatgcagttggagaggttgacttggag
aagaaattcgcagcagcaagtgaaagcctccggcgaggtatcatgtttgcaaattcgctg
tatctgtga
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