Lupinus angustifolius (narrow-leaved blue lupine): 109351056
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Entry
109351056 CDS
T04664
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109351056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109351056
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109351056
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109351056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109351056
NCBI-ProteinID:
XP_019447927
LinkDB
All DBs
Position
LG06:30571270..30578344
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AA seq
667 aa
AA seq
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MSGLLNSSLNGSASNLPDGAARSFATSFSGQSGAASPVFHHTGSIQGLHNIHGSFNVPNM
PGTLSSRNSTINSVPTGGAQQPTASLSSGRFASNNIPVALSQLSHGSSHGHSGVNNRGGI
SVVGNPGFSSSSNGVGGSIPGILPTSATMGNRNTVPGLGVSPILGNTGPRITSSMGNMVG
GGNIGRIGSGGGLSVPGLGRLNLSGNGGSGGLGAQGQNRLMGGMLPQGSPQVISMLGSSY
PGAGGPLSQSHVQAVNNLNSMGMLNDVNSSDNSPFDINDFPQLTSRPSSSGGPQGQLGSL
RKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADFGMDVHQKEQLHDNAVSMMQSQHF
SQMGRSAGFSLGGSYSSHRTQQQQQHGPSVSSGGVSFSSINNQDLLHLHGSDVFPSSHST
YHSQSQTSGPPGIGLRPLNSPNTVSGMNSYDQLIHQYQHQNQSQLRNLHQMSAVNQSFRD
QGLKSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGS
PWSDEPAKGDPEFSVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANEL
YKRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPSTFETVRKDNFVLHYEMLEK
RPALPQH
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggattacttaattcttctctgaacggatctgcttcaaatcttccagacggtgct
gcacggtcttttgctacatcattctccggtcagtctggtgcagcttccccagtttttcat
cacactggatctattcaggggttgcataacattcatgggagctttaacgttccaaacatg
cctggtacactctcatcaagaaactcaacgataaacagtgttccaactggtggggctcaa
caacctacagcgagcctttctagtggaaggtttgcatcaaataatatacccgttgctctt
tcacagctatctcatggaagctctcatggacattcaggagtcaacaatagagggggtata
agtgttgtaggaaatcctggatttagtagtagctcaaatggagttggcggttctattcct
gggattcttccaacttctgccacaatgggtaaccgaaacactgttccaggattgggggta
tccccgattttgggaaacacaggtcctcgaattacaagttctatgggaaacatggtgggc
ggggggaacattgggaggataggctctggtggaggattgtctgtacctggtcttggtcga
ctaaatttaagtggaaatggtggatctggaggtttaggtgcgcaaggacaaaatcgactg
atgggtggtatgcttccacaaggatctccacaggtaatttcaatgctaggaagctcttat
cctggtgccggtggtcctctttcacaaagccatgttcaagcagtaaataacttgaactca
atggggatgttgaatgatgtgaattcaagtgacaattcaccttttgacatcaatgacttt
cctcaattgacaagccgtcctagttcttctggaggacctcaaggacagttgggttcttta
cgaaaacagggtcttggtgttagcccaattgtccaacaaaaccaagagtttagcattcaa
aatgaagatttcccagctttaccaggattcaaaggtggtaatgcagattttggcatggat
gtgcaccagaaagaacaacttcatgacaatgctgtatctatgatgcaatctcaacatttc
tcgcagatggggaggtctgctggtttcagtttggggggatcatattcatcacaccgtaca
caacagcagcagcagcatggtccttcagtaagtagcggtggtgtttccttttcatctata
aacaatcaagatcttctccatctgcatggctcagatgtatttccatcatcacactcaact
tatcattcccaatcacagaccagtggacctcctggcattggattaaggcctctaaattct
ccaaacacagtttctggtatgaattcatatgaccaactcatccatcaatatcaacatcag
aaccaatcccagctccgcaaccttcaccagatgtcagctgtaaatcagtcttttagggat
cagggcctgaagtctatgcaaactgcacaatctgctccagacccatttggtttgcttggc
ttgttaagtgttatcaggatgagtgatcctgacctgacatctcttgctcttggaattgac
cttacaacacttgggttaaatttgaattcatcagaaaatttgcacaagacttttgggtct
ccatggtctgatgaaccggctaagggtgatccagagttcagtgtgccacaatgttattat
gctaaacaacctcctgctctacatcaaggttacttttcaaagttttcggtggaaacgttg
ttttacatattttacagtatgcccaaagatgaggcacagctatatgcagccaatgaactt
tacaaacgagggtggttttatcacaaagagcatcgcttgtggtttataagagttcccaac
atggagccgcttgtcaaaactaacacatatgagagagggtcttaccactgttttgatcca
agcactttcgaaactgtccggaaggataattttgttcttcattatgaaatgttggagaag
agaccggcattgccccaacattga
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