Lupinus angustifolius (narrow-leaved blue lupine): 109357035
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Entry
109357035 CDS
T04664
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109357035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lang03021
]
109357035
03019 Messenger RNA biogenesis [BR:
lang03019
]
109357035
Transcription machinery [BR:
lang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109357035
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109357035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
109357035
NCBI-ProteinID:
XP_019456273
LinkDB
All DBs
Position
LG09:complement(5675734..5682424)
Genome browser
AA seq
1036 aa
AA seq
DB search
MDTRRSRGIEPGAKKPRLINELDRGSILGPPPLPRRQAASGVTKLGSARFGVNGRDPEKS
DLGHGVDDDDDDGGYHPQPPPHQELVVQYKTALAELTFNSKPIITNLTIIAGENVAAAKA
VAGIVCSNIVEVPSEQKLPSLYLLDSIVKNIGRDYIKYFADRLPEVFCEAYRQVDSPVHS
NMRHLFGTWKGVFPTQTLQMIEKELGFTSAANGSASTSASVRSDSQSQRPPNSIHVNPKY
LERQRLQQSIKTKGGVNDMNEAFLNSKEDPERALGSARPLLDPRITMKNNLRINRDAFND
SVPEKSIRESYGGNQYSSDTSNKLSLVVGRTFGRVTELGHDKPWYKAGGIVAETRSGQGI
DFSVKHGFSNHEALKSMKLDAHRQPTLNINNKRSSVMSSNWKNSEEEEFTWDEMNTGLTG
HGAPNVSNNLSTDTWTADDENLEGEDHLQIAHTFGEKVDREIFTVKKQLPAFVGHQSLSW
KLQDQHSNDKLNLKPGRSEELLSNSGVFPTNTTSLSVGMQNRSFMPNAMIGMTEVMRQQQ
FDSARAESPSLPVNVRHPHPMQNLAEQDRPQTRKASQYLGTLQSQHTRDSSIALPPNVQV
GNLRRSQERDLQGPLSSAASFQPKLQQRLGPSQAEVTVKPKKPPQSKVTLARKTSEQSTT
SSMPAAAVKKGISPNKSIISSLPTTSSLDTRNVQPQLEVRPTRSSGPSPTTLISSAPVVA
SPSSLGPLNDDSPTLPKMTQRKAGQPPRGSTQLPASSNGSSARDPPSNASNNNTSNPIAN
LLSSLVAKGLISSKTESPTKVPTEVLSQLEEKTESIAASSSSPVASVSVSAAVPIPSSRD
EVDDTAKSSLALSKSTSMEIRNLIGFDFKPDVIREMHPLVISTLLDDLPHHCTVCGTRLK
LQEQFDRHLEWHATREKEQSGLITASRKWYAKSNDWIAGKDEYPSEHELTDSVDVHDKET
EENQLDTTVVADENQCLCVLCGELFEDVYCRERDEWMFKGAVYLNDTDGNSEMESRNPGP
IIHARCLSENPISSVT
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggatactcgtagatcgagaggtatcgaacccggtgcgaagaagcctcgattgatcaac
gagcttgaccgcggttcgattctcggtccaccacctttgcctcggcgacaagcggcttct
ggggttacaaaattggggtctgcgagatttggagtaaatgggagagaccctgagaagagt
gatttggggcacggtgttgacgacgatgatgatgatggtggttaccacccgcagccgcca
ccacaccaagagcttgtggttcagtataagactgcgctggctgaattgactttcaattcg
aagccgataattacgaatttgactataattgctggagagaatgtagctgctgctaaggca
gttgctgggattgtttgttctaatattgttgaggttccaagtgaacaaaagctgccatct
ctttatctcttagacagtattgttaagaatattgggcgggattatataaaatactttgct
gacagactacctgaggtattctgtgaggcatacagacaggttgattctccggtgcattca
aacatgagacatctttttgggacttggaaaggtgtctttcctacccagactcttcagatg
attgagaaggaacttggctttacttctgcagccaatggttcagcttccacatctgcttca
gtcaggagtgactcgcagtcgcaacgcccacccaatagcatccatgtgaatcccaagtat
ctagaaaggcagcgtcttcaacagtccatcaagactaaaggaggagtaaatgatatgaat
gaagcttttttaaactcaaaagaggacccagagagagctttgggttctgcacgaccattg
ctggatcctaggattaccatgaaaaataatctacgcattaatagagatgcatttaatgat
tctgttcctgaaaagagcattcgtgagtcctatggaggcaatcaatatagttctgatact
tcaaataaattgagtttagttgttggaagaactttcggtagggtcactgagttaggacat
gacaaaccttggtataaagcaggtggtattgttgcagagaccagatctgggcaaggaatt
gatttcagtgtcaagcatggtttttcaaatcatgaagcattgaagtccatgaaattggat
gcacatcgtcagccgacactgaacataaataataaaaggagcagtgttatgtcaagtaac
tggaaaaattctgaggaggaggagttcacgtgggatgagatgaacactgggttgactggt
catggtgcacccaacgtctctaataacttgagcacagacacatggactgctgatgatgag
aatttggaaggtgaagatcacctacaaattgcacacactttcggggaaaaggttgataga
gaaatattcactgttaagaaacaactacctgcatttgtgggccatcaatcgctgtcatgg
aaattgcaggatcaacactcaaatgataagttgaatctgaagccaggtcgctcagaagaa
cttttgtccaattctggtgtgtttccaaccaatacgacttctttgtctgttgggatgcag
aatcggtccttcatgccaaatgcaatgataggaatgaccgaagttatgaggcaacagcaa
tttgattctgcgagagctgaatccccatcactgccagtaaatgtgcgccaccctcatcca
atgcaaaatttggctgagcaagatcgtccccagactcgtaaagcatctcagtatttggga
actctacagagccaacatactagagattcttcaattgcccttcctccaaatgtccaggtt
ggtaacttgcgaagatcacaggaaagggacttgcagggtccattatcttcggcagcttct
tttcagccaaagcttcaacagaggctgggcccttctcaggctgaagttactgttaaacca
aagaagccaccccagtctaaagttactctagccaggaaaacttcggaacagtcaacgaca
agtagtatgccagctgcagctgtgaaaaagggtatatcacccaacaaatcaattattagt
agtcttcctactacaagtagtctggatacaaggaatgttcaacctcaattagaggttagg
cctactcggtcaagtgggccttccccgaccacattaatttcttcagcgcctgtggttgca
tccccatcttcattaggtcctttgaatgacgattcacctactctgccaaaaatgactcaa
agaaaggctgggcagccaccaagggggtctactcaactaccagcttcctctaatgggagc
agtgcccgagatccgccctcaaatgccagcaataataatacctcaaatccaattgccaac
cttttgagctcattagttgcaaagggattgatatcttcaaaaacagagtcaccgactaag
gtaccaactgaggtgctgagtcaattggaagagaaaacggaaagcattgctgccagtagc
tcttcgccagtcgcttcagtttctgtttctgcagctgtcccaataccatcttccagagat
gaggtagatgatactgcaaaatcgtcacttgccttatctaaatcaaccagcatggaaatc
agaaatctcattggctttgattttaagccagatgtaatccgagaaatgcatccacttgta
attagcaccttattggatgatctcccacatcattgcacagtttgtggtactcggcttaaa
ctacaagaacagtttgatagacacttggagtggcatgccactagagaaaaagagcaaagt
ggtctaattacggcatcaagaaaatggtatgcaaaatcaaatgattggattgctggcaag
gatgagtatccatctgagcatgagctcactgattctgtagatgtacatgacaaggaaaca
gaggagaatcaattggatactactgttgtagctgatgaaaaccagtgcttgtgtgtattg
tgtggcgagctatttgaagatgtctactgccgggaaagggatgaatggatgttcaaaggg
gctgtatacttgaacgacacagatggcaatagtgagatggaaagtagaaatccgggtccc
attattcacgctagatgcttatcagagaacccgatatccagtgtcacctag
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