Lupinus angustifolius (narrow-leaved blue lupine): 109357081
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Entry
109357081 CDS
T04664
Name
(RefSeq) uncharacterized LOC109357081
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109357081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109357081
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109357081
mRNA degradation factors
5'-3' decay
Decapping complex
109357081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
109357081
NCBI-ProteinID:
XP_019456343
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All DBs
Position
LG09:2632059..2640155
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AA seq
815 aa
AA seq
DB search
MDAFGDGPTNPQNSKQFGDVPSEGEVFDASQYDFFGKDFVAEIELGGLEDEEGQLAPVEF
DEEEEIFFNREEAEDIRSISEIDNLSTTFSKLNKVAVSGQRSTGLISDHGSIENSPAAEW
THRGDIFNFYEQHNYDTAGGQDIKRWSSQPHTSLAQFQESNGLSRTSSYPEQQQHQQFSS
EPIMVPKSSFTSYPHSGGGSQHASPNQSAGHLNIPHRAGRSQVPFSSPNHSHLSNPQIQF
TGLNHGSPLGGNMHQFASGSPVNSRMPNQWVNQEELYPGGLPNTMNNLLLQQLPLHNGSI
PPHLVTQLQQSQQRLHPPPPQPSPGYLKGLQSHQFNPNISSGLLMINNYDQMLELMELRD
QIPKAAQTGRQNLHFQPQGFNTSSQRSNSGWPRFRSKCMMTEEIENILKVQLAATHSTDP
YVDDYYHQARLAKKSSGAKLKHRFCPNQIREHPPGASANNEPHAFLQVDALGRVPFSSIR
RPRPLLEVDPPNSSPAGNIGQNIPEKPLEQEPMLAARITIEDGLCSLLDVDDIDRFLRFN
QLQDGGIHLKQKRQGLLEGLAASLQLVDPLGKSGQSVGLDAKGDPVFLNIVSLPKGLKLL
AKYLQLLFPGGDLMRIVCMAIFRHLRFIFGGLPSDPVGAETVSNLARVVSKCIHEMDLGA
LSVCLAAVVCSSEQPPLRPLGSSAGDGASLVLVSVLGRATELLTDPHAASNYNIANRSLW
QASFDSFFGLLTKYCVNKYDSIVQSLLIQGTPNISVIGSNAAKAISREMPVELLRTSLPH
TDDSQKKQLLDFAQRSMPVVGFNSNSGGNGGHVNS
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgtttggtgatggccctacgaaccctcagaattcgaagcaatttggagatgtt
ccttctgagggtgaagtatttgatgcatcacaatatgacttctttggcaaagattttgtt
gcggaaatcgagttgggaggtttagaagatgaagagggtcaattggctccagttgaattt
gatgaagaggaagagatttttttcaatagagaagaggctgaggatataagatctatttca
gagattgataatctcagtaccactttttcaaagttgaacaaggtggctgttagtgggcaa
agaagcacaggacttattagtgatcatggatcaatagaaaattcacctgctgctgaatgg
acacacaggggtgacatcttcaatttttatgagcagcataattatgacaccgcaggtggt
caggatatcaaaagatggtcatcacaaccgcatacttcgttggctcagtttcaggaatca
aatggcttgtctagaacatcttcatatcctgagcagcagcaacatcaacaattctctagt
gaacccattatggtgccgaagtcgtcttttacatcttatcctcactctggtggtgggtcc
caacatgcttcaccaaatcagagtgcaggccatctaaacattccacatcgtgctggtagg
tcccaggtgccattctcttcacctaatcattcccatttatccaatccccagattcaattc
actggtctgaaccatgggtcccctcttggtggaaatatgcatcagtttgctagtggttct
cctgttaatagtcgaatgccaaaccaatgggtcaaccaagaggaattatatcctggaggt
cttccgaacactatgaacaatttattgctgcaacagttaccccttcataatggatcaata
cctccacatttggtgactcaattgcagcaatcacagcagagattgcatcctcctcctcct
cagccttcaccaggctatttaaagggtttgcagtcacatcaatttaatcccaatatttcg
tcaggtttacttatgataaacaactatgaccagatgcttgaactgatggaactaagggat
caaataccaaaagcagctcaaacaggtagacagaatctccatttccaaccacagggtttt
aatacgagtagccagcggagcaatagtgggtggccccgatttaggtccaagtgtatgatg
actgaggaaattgagaatattcttaaagtgcagcttgcagcaacacatagtactgatcca
tatgtagatgattattaccaccaagctcgtcttgcaaagaaatcttcaggtgctaaattg
aagcatcgcttttgtccaaatcaaataagagaacaccctccaggagcctctgctaataat
gaaccgcatgcttttcttcaggttgatgctctagggagggttccattctcatcaattcgc
aggccccgtcctctactggaagttgatcctccaaattcctcgcctgccgggaacattggt
caaaacattccagagaagccccttgaacaggagccaatgcttgcagcaaggatcacaatt
gaggatggtctttgttctcttcttgatgtagatgatattgaccgttttctacgatttaac
cagcttcaagatggtggaattcatttaaagcagaagcggcagggtcttctggaaggcctt
gcagcctctcttcaattagttgatccactaggaaagagtggacagtcagttgggcttgat
gcaaagggtgatcctgtttttctcaatatagtttctctacccaagggtctgaagctactt
gctaagtatcttcaactgctttttccaggtggtgatcttatgcgaatagtctgcatggcc
atctttcgccatttaagattcatatttggtggccttccctccgatccagttggagcagaa
actgtaagtaaccttgcaagggttgtttcaaagtgcatccatgaaatggatctaggtgca
cttagtgtttgtctagcagcagttgtttgttcttctgagcagcctcctcttcgtcccctt
ggaagttctgctggagatggggcttcccttgtcttagtttctgtgcttggaagggctact
gaacttttaactgatcctcatgctgccagcaactacaatattgcaaatcgctcactttgg
caggcttcatttgattcattctttggtcttctgactaagtattgtgtgaataaatatgat
agcatcgtgcaatcactgcttattcaagggacaccaaatatatctgtcattgggtcaaat
gctgctaaagctattagtagggaaatgccagttgagctcttacgtacaagtctaccacac
accgatgatagtcagaaaaagcaattacttgattttgctcagcgttcgatgcctgtagtt
ggatttaatagtaattctgggggtaatggcggccatgtaaattcataa
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