Lupinus angustifolius (narrow-leaved blue lupine): 109358176
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Entry
109358176 CDS
T04664
Name
(RefSeq) uncharacterized LOC109358176
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109358176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lang03000
]
109358176
03019 Messenger RNA biogenesis [BR:
lang03019
]
109358176
04121 Ubiquitin system [BR:
lang04121
]
109358176
Enzymes [BR:
lang01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109358176
Transcription factors [BR:
lang03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109358176
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109358176
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109358176
Ubiquitin system [BR:
lang04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109358176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Rtf2
zf-RING_2
zf-UDP
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
109358176
NCBI-ProteinID:
XP_019457805
LinkDB
All DBs
Position
LG10:complement(712486..721573)
Genome browser
AA seq
1022 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQHLKPCKCGYQICVWCWHHIMDMAEKDDTEGRCPACRSPY
DKNKIVGMAANCERLVAEVHMEKRLKNQKAKSKSYEGRKQLSNVRVIQRNLVYIVGLPLN
LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAVRCIQNVN
GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFSKDEIRGRVQQITG
AANNMQQRSGTVLPPPLDDCMNNSPGKPIMKNGSSSSASLVRGSPPNGSSGRPMALPAAA
WGSRATNCQPAAGVTLGSNGPSKPRSDTISSALSCSLAVADTNLASLHIDVTTRPLSSDE
SRSMTSSVKNESLKPVIQYNSVDSSDGEKTLPSDVSLASLNLNNQLSSLSLAGDSDKGSC
TSTNTTNSIDITGQPCSFGLEEAIITTTEHFHNLSSELSSINNDRSARNEHYSLTKPSTP
PSDSVLVKYSQSQGLQINSDKFGDSMITNAAVSAATSDNGVCNSKEWCALRFDSQPLVLS
GNAEVEDDVASFDNQRLKDPEVVCRSYLPKSSSFLHASNCYNPQLPQHGERVVANAGSIS
MADKVGNDSVLHAPDILCNGYPKKLASISSYSLSHDEGNKQCNGRLVTEAVNTGSGAAVD
KGESTIISNILSMEFDGWADSLTSPKNLAKLLGDNTDNQNGSLKNSSTRKVLSNNQSRFS
FARQEESNIHAFNVHPSYNSSQQFPNSCSLMQEFSERDVSMDKFGIANGFHANSLEESEI
LRNGHFLASPNRPSVVSRSQISAPPGFSVPSRLPPPGFSSYERMGQAVDSFSGNRLLDPS
SLRSNSYQTPSTVNNGGAGDIEFMDPAILAVGKGRLHGAALINPVSDMRSNYPPQLNYFE
NEARLQIPMQRSFSPQQNLRFSEFENNFSLVGDSYAISSRLDQSQISNQASYPQLSMQQS
RNAALSNGQWDAWNEVESGNTLNMAELLRNERLGLNKFYKGYDDSKYRMPNSADLYKRTF
GI
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgaaggagaaaggacttgccctctctgtgctgaagagatggatttgacagat
caacacttgaaaccatgcaaatgtggttatcagatatgtgtctggtgttggcatcacata
atggacatggctgagaaggatgacacagaggggcgatgccctgcttgtcgttctccatat
gacaagaataagattgtcggaatggctgcaaactgtgagagattggtagcggaagttcat
atggaaaaaaggttgaagaaccagaaagcaaaatctaagtcatatgaaggacggaagcag
ctcagcaatgtgcgggtgattcagcggaaccttgtttacattgtgggattgcctcttaat
ttgggagatgaagatcttctccagcggcgagagtattttggtcaatatgggaaggtctta
aaagtgtcgatgtctcggacggcagctggtgttgttcagcagtttccaaataatacatgt
agtgtatatattacttattcaaaggaagaagaagcggtccgttgcattcaaaatgtaaat
ggatttgttttggaggatagacctttaagggcttgttttggaacaacaaaatattgtcat
gcatggctccgaaatatgccttgcagcaatccagattgtctatatctgcatgagattggc
tcccaagaagatagtttctctaaagatgaaattagaggtcgtgttcaacaaattactggc
gctgccaacaatatgcaacaacggtcagggactgtattgcctcctcccttggatgattgc
atgaataactcgccaggaaaacccattatgaaaaatggttcaagtagctcggctagcctt
gtaagaggttcacctcctaatggaagctctggcaggcctatggctcttcctgctgctgcc
tggggttcacgggctaccaattgtcagcctgctgctggagttacattaggctcaaatggc
ccatccaagcccagatccgatacaatcagcagtgcactgtcgtgctccttagctgttgca
gacacaaatctggcttcactgcatattgatgtgacaacgaggcctctgtccagtgatgag
agtcgtagtatgacatctagcgtaaaaaacgaatcgttgaaacctgttatacagtacaat
agcgtggatagcagtgatggcgaaaaaaccttaccctctgatgtttctcttgcatcttta
aatttgaacaatcagttgtcttctctatcattagctggagatagtgataaaggcagttgt
acttcaacaaacacgacaaattctattgacatcactggacaaccatgcagctttggtctt
gaagaagcaattattactacaactgaacattttcataatttatcttctgagttatcgtca
attaacaatgatagaagtgcccggaatgaacactacagcctaactaaacctagtacacca
ccttctgattccgtcttagtcaaatattcccagtctcaaggattacagatcaattctgac
aaatttggagattcaatgattacaaatgcagctgtatcagctgccacatcagataatggg
gtttgtaattcaaaggaatggtgtgctttgagatttgattctcaaccccttgtattatca
ggtaacgctgaagtggaagacgatgtagcatcttttgataatcaacggctcaaggatcca
gaagttgtttgtcgttcttatttgccaaagtcgtctagcttcctgcatgcctcaaactgt
tataatcctcagcttcctcaacatggtgaacgtgttgttgcaaatgctggttccatatct
atggctgataaagttgggaatgattctgtattgcatgcacctgacattttatgcaatgga
taccctaaaaaattggcaagtatcagctcttatagtttgtctcatgatgaaggaaacaaa
caatgcaatggaagattagttactgaagctgttaatactggaagtggtgctgctgtggat
aagggtgagagtactataatttcaaatatattgtccatggaattcgatggctgggctgac
tcactaacatcacctaagaatttggccaaactgttgggtgacaacactgataaccagaat
ggttcattgaagaattctagtacccggaaagtcctaagtaacaatcaatcaagattttct
tttgcaaggcaagaggaatccaacattcatgcctttaatgtacatccatcatacaatagc
agccagcaatttccaaatagctgttcactcatgcaggaattttcagaaagagatgtgtct
atggataagtttggtattgctaatggcttccatgccaatagccttgaggaatcagaaatt
ctacgcaatggtcattttcttgcttctcctaataggccttctgttgtttcaagatctcaa
atttcggcgccgccaggattttcagttccaagcaggctgcctcctcctggtttttcgtct
tatgagagaatgggtcaggccgttgactccttttctgggaatcggttgcttgacccttct
tccttacgtagtaactcgtatcagactccatcaactgtaaataatggtggtgctggagac
attgaatttatggaccctgctattttagctgttggtaaggggagactgcatggtgcagca
ttaatcaacccagtgtcggacatgcgatccaattatcctccacaattaaattactttgaa
aatgaggccagacttcaaatacctatgcaaagatctttctcaccacagcaaaaccttcgg
ttttctgaatttgagaataatttttctctggttggtgattcttatgccatttcttcgagg
ttagatcaatcacaaatcagtaatcaggcctcatatcctcagttatctatgcagcagtct
agaaatgcagctttgtcaaatgggcagtgggatgcctggaatgaggtggagagtggaaat
actttgaatatggctgaacttctgagaaatgaaagacttggacttaacaagttctataaa
ggatatgatgattcaaaatatcggatgccaaattctgcagatctttacaaaaggacattt
gggatttga
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