Lupinus angustifolius (narrow-leaved blue lupine): 109358249
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Entry
109358249 CDS
T04664
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109358249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109358249
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109358249
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109358249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109358249
NCBI-ProteinID:
XP_019457920
LinkDB
All DBs
Position
LG10:complement(629650..635879)
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AA seq
664 aa
AA seq
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MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASTVFHHTGSIQGLHNIHGTFNVPNM
PGSLSSRNSTINSVPTGGAQQPTSSLSSGRFASNNLPVALSQLSHGSSHGPSGVNNRGGI
SFLGNPGFSSSSNGVGGSIPGIIPTHTAIGNRNTVAGLGVSPILGNAGSRITSPMGNMVS
GGNIGRISSGGGLSVPGLGRLNLSGNGGLGVQGQNRLMGGMLPQGSPQVISMLGSSYPGA
GGPLSQSHVQAVNSLNSMGMLNDVNSSDSSPYDINDFPQLTSRPSSAGGPQGQLGSLRKQ
GLGVSPIVQQNQEFSIQSEDFPALPGFKGGNADFGMDMHQKEQLHDNAVSMMQSQHFPMG
RSGGFNLGGSYSSHRTQQQQQHGPSVSSGGVPFSSINNQDLLHLHGSDVFPASHSTYHSQ
SQTSGPPGIGLRPLNSPNTVSGMSSYDQLIQQYQQNQSQSQLRTLQQMSAVNQSFRDQGL
KSMQTGQSSPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWS
DEAAKGDPEFSVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYKR
GWFYHKEHRLWFIRVANMEPLVKTNTYERGSYHCFDPSTFETVRKDNFVLHYEMLEKRPP
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttcgctaaatggatctgcttcaaatcttccagacggtgct
gggcgctcttttgctacatcattctctggtcagtctggtgcggcttccacagtttttcat
cacactggatctattcaggggttgcataacatccatgggacctttaatgttccaaacatg
cctggttcactctcatcaagaaactcaaccataaatagtgttccaactgggggggctcaa
caacctacgtcaagcctttctagtggaagatttgcatcaaataatctacctgttgcactg
tcacagctatcccatggaagctcccatggaccttcaggagtcaataatagaggaggtata
agttttttaggaaatcctggatttagtagtagctcaaatggagttggtggctccattcct
gggattattccaactcatactgcaattggtaacagaaatactgttgcaggattgggagta
tccccaattctgggaaatgcaggttctcgaattacaagtcctatgggaaacatggtcagc
gggggaaacatcgggaggataagctctggtggaggattgtctgtacctggtcttggtcgt
ttaaatttaagcggaaatggtggattaggtgtgcaaggacaaaatcgactgatgggtggt
atgcttccacaaggatctccacaggtaatttcaatgctaggaagctcttatcctggtgct
ggtggtccactttcacaaagtcatgttcaagcagtaaatagcttgaattcaatggggatg
ttgaatgatgtgaattccagtgacagttcaccttatgacatcaatgactttcctcaactg
acaagtcgtcctagttctgctggaggacctcaagggcagttgggttctttacgaaaacag
ggtcttggtgttagtcccattgtccaacaaaaccaagagtttagtattcaaagtgaagat
ttcccagctttaccgggatttaaaggtggtaatgcagattttggcatggatatgcaccag
aaagaacaacttcatgacaatgctgtatcaatgatgcaatctcagcatttcccaatgggg
aggtctggtggtttcaatttggggggatcatattcatcacatcgcacacagcagcaacag
cagcatggtccttcagtcagtagcggtggtgtccccttttcatctataaataatcaagat
cttctccatctgcatgggtcagatgtttttccagcatcacactcaacgtatcattcccaa
tcacagaccagcggacctcctggcattggattaaggcctctaaattctccaaatactgtt
tctgggatgagttcatatgaccaactcatccagcagtatcaacaaaatcagagccaatcc
cagctccgcacccttcagcaaatgtcagctgtaaatcagtcttttagggatcagggcctg
aagtctatgcaaactggacaatctagtccagatccatttggtttgcttggcttgttaagt
gtcatcaggatgagtgatcctgacctgacatctcttgctcttggaattgaccttacaaca
cttgggttaaatttgaattcatcagaaaatcttcacaagacttttgggtctccatggtct
gatgaagcggctaagggtgatccagagttcagtgtgccacaatgttattatgctaaacag
cctcctgctctacatcaaggttacttttcaaagttttcggtggaaacgttgttttacata
ttttacagcatgcccaaagatgaggcacagctatatgcagctaatgaactttacaaacga
gggtggttttatcacaaagagcatcggttgtggtttataagagttgccaacatggagcca
cttgtcaaaacaaacacatatgagagaggatcttaccactgttttgatccaagcactttt
gaaacggtccggaaggataattttgttcttcattatgaaatgttggagaagagaccacct
ttgccgcaacattga
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