KEGG   Lupinus angustifolius (narrow-leaved blue lupine): 109358703
Entry
109358703         CDS       T04664                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
lang  Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109358703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lang03041]
    109358703
Spliceosome [BR:lang03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109358703
 Complex C
   U5 SnRNP specific factors
    109358703
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SPT8 Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_RIG_1st eIF2A Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_Nup120_160 RMC1_N Nbas_N
Other DBs
NCBI-GeneID: 109358703
NCBI-ProteinID: XP_019458646
UniProt: A0A1J7HNK5
LinkDB
Position
LG10:10177561..10180602
AA seq 345 aa
MQVFPGGGDNALSVVGPRPMEWSTVPYSGPHVPGPNGKQRTSSLESPIMLLAGHQSAIYT
MKFNPEGSVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSSSPDK
TLRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCNWSADGSKVTAGSSDRMVYI
WDTTTRRILYKLPGHNGSVNECDFHPKEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagtttttcccggtggaggtgacaatgctttgtcagttgttggtccaaggccaatg
gaatggtctactgttccatatagcggtcctcatgttcccggtccaaatggaaagcagcgg
acgtcgagtttggaatcaccaatcatgttgctggcaggtcaccaaagtgctatatatacc
atgaagttcaatccagaaggatcagtcattgcatctggatctcatgacagagaaattttc
ctctggaatgtgcatggtgattgtaagaacttcatggttctaaaaggccataagaatgca
gttttggatcttcactggactacagatgggactcagatagtctcttccagccctgataaa
actctgagggcatgggatgtggaaacaggaaaacaaattaagaagatggtagagcatctt
tcgtatgttaattcatgttgtccttctcggagggggccacctcttgttgtcagcggctct
gacgatggaactgctaaactatgggacatgcgtcaaaggggttctatccaaacattccca
gataaataccagattactgctgtcagcttctctgatgcatctgataagatctacactggt
ggtattgataatgatgtcaaggtatgggatttgcgtaaaggtgaggttatcatgacactt
caaggtcaccaagatatgattacgggtatgcagttgagtcctgatggttcctaccttctt
actaatggcatggattgcaagctttgcatctgggatatgcgcccatatgcacctcaaaat
cgctgtgtgaaggtcttggaagggcaccaacacaacttcgaaaagaacttgctcaagtgt
aattggtcagctgatggaagcaaggtcacagctggtagttcagatcgaatggtttacata
tgggataccaccactcggcgcatcttgtacaagcttcctggtcacaatggatctgttaat
gagtgtgattttcatcccaaagaacctattatcggatcttgcagtagtgacaaacagatt
tatctgggagagatatga

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