Lupinus angustifolius (narrow-leaved blue lupine): 109363330
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Entry
109363330 CDS
T04664
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109363330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lang03021
]
109363330
03019 Messenger RNA biogenesis [BR:
lang03019
]
109363330
Transcription machinery [BR:
lang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109363330
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109363330
U7-dependent histone pre-mRNA processing factors
109363330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
CRM1_C
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
109363330
NCBI-ProteinID:
XP_019465108
UniProt:
A0A4P1RTF7
LinkDB
All DBs
Position
LG01:35400002..35416893
Genome browser
AA seq
1345 aa
AA seq
DB search
MVGKLSMAASSRENLASLVNSSNLAIDIPSKLQSLRHLKRDLPQQDPVLLTEFLPSLFDF
LSDRFSPVRKFVTQMVGEIGLENTEFLPDIVPVLIDVLDDDTPAVVRQAILCGIELFRST
LEKITIQGLYSSDLDSALESAWAWMVKFKEKVYSIAFQHGSGGAKLLALKFVEAIIHLYT
PDPNGSSEPTSHQGRPVKFNISWLRRGHPVLNIRDLSIEASHSLGLLLDQLRIPNVKSLN
HSVVIVLIKSLSAIAIDRPAFFGRILPVLLSLEPSSSVVNGYRVTAAHLSLKNAFLTCSK
CTHPSAAPWRERLEDALKEMQSEGKADQVFHIIISPSKGSMEIEKDDQPIVKKEEPTVNS
CDSVHSDFGRKRPGSQSGSDLAEDEDVAGKRAKTTIIGLKEPKKEADRSTTNSQGGSPST
VPTSSKGDTDNGPVHQLVAMFGTLVAQGEKAVASLEILISSISADLLAEVVMANMRYLPA
NYPYADGDDEQVHDISIIGSDDKAKYPPSFIAGVMSLSSTFPPIALLLDAHQTVSNEKSQ
GEDEILATGEDNVVVHSGMNLSSENVSSPTEFPSLDAGIPGVENVFATVPPSDVHDVGNL
ETGIPGLESVGCSVDLSETLDAPSLASPEIKSEEGSQEQIMSLDERSPLNLVPSISTDRS
EELSPKAIVTDVNSLVSSTATSIVLPARLILPKMIAPVVDLADEQKDNIQKLCFMRIIDA
YKQVAVAGGSKVRFSILAYLGVEFPLELDPWKLLQKHILVDYTGHEGHELTLCVLYRLFG
EAEEEPDFFSSTTAAAVYETFLQTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLRILED
MCSPGNGDKVEKELQTVNADRVTQGLSAVWSLILLRPPIRDTCLKIALQSAVHHLEEVRM
KAIRLVANKLYPLSSISLQIEDFAKEKLCSVMSVDAPEVTNAEGSIADSQKGLDIEKLAN
EPSSLSGSTKDISDNCQSHTSESTSSVSVSEAQRCMSLYFALCTKKHTLFRQIFVIYRST
SKAVKQAVHHQIPILVRTMGSSPHLLDIISDPPYGSENLLMQVLQTLTDGTTPSKELVFT
VWKLHGSKLKDAAVLIPILPFLTKDEVMPVFPNIVNLPLEKFQAALGRILQGSAQSGPVL
SPAEVLIAIHGIDPDRDGIPLKKVTDACNICFEQRQTFTQEVLAKVLNQLVEQIPLPLLF
MRTVLQAIGAFPTLVDFIMGILSRLVTKQIWKYPKLWVGFLKCLQLTKPQSFGVLLQLPP
AQLEIALNRAAALKAPLIAHASQADIQSSLPRSVLVVLGIASDSQVPSQAQTSQTQADSE
TQTVETSNSAKDSVTEKSKESSTAT
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggttgggaaattatccatggctgcaagttcccgtgaaaacctcgctagtcttgtcaac
tcttccaatttagcaattgatataccctcaaagcttcaatctttgcgccatctgaagcga
gatcttccccaacaagaccctgttctcctcaccgagtttctcccttctctctttgatttc
ctctctgatcgcttcagccccgttcgcaaattcgtcactcagatggttggtgaaattggg
ttggagaatactgagttcttgcctgatattgtgcctgttctgattgatgtattggacgat
gataccccggctgtggttcgacaggctatactttgcggcattgaattgtttcgttcaact
cttgagaaaatcacgattcagggtctatattctagtgatttagacagtgcacttgaatct
gcatgggcatggatggttaaattcaaagaaaaagtatactcaatagcttttcaacatgga
agtggtggtgcgaagctgctggcattgaagtttgttgaagcaattattcatctttacaca
cctgatcctaatggttcgtcagagcccacatctcatcaaggaaggcccgtgaaatttaat
atatcatggctgaggcggggtcatcctgtgcttaatattcgagatttgtcaattgaagct
agtcatagtttgggtctcttgcttgatcaacttaggattccaaatgtgaagtctcttaat
cattcagtggtcattgtgctaattaaaagcctttcagccattgcaatagacaggcctgca
ttctttggccgcatcttgccagttttgctcagtttagaaccctcaagctctgttgttaat
gggtaccgtgtaacagctgcacatctctctttgaagaatgcatttcttacctgctcaaaa
tgtacacatccaagtgctgctccgtggagggaacgtttggaagatgccttgaaggagatg
cagtctgaagggaaggcagaccaggttttccacataatcatatctccaagcaaaggaagt
atggaaatagagaaggatgatcaaccaattgtcaagaaagaggaacctacagtaaattca
tgtgactcagtgcacagtgattttggtagaaaacgaccaggatcacaaagtggaagtgat
ttagctgaagatgaagatgtggcaggaaaacgtgccaaaacaacaataattggtttaaaa
gaaccaaagaaagaggcagatagaagtacaactaactctcagggtggtagtccttcaact
gttccaacatcatcaaagggagatactgataatgggcctgtacaccaacttgttgccatg
tttggtactttggttgctcaaggtgaaaaagctgttgcatctttggaaattctcatctca
agtatttctgccgacttgctagctgaggtggtcatggcaaatatgcgttacctacctgct
aattacccttatgctgatggagatgatgaacaggtgcatgacattagcataattggttct
gatgacaaggctaaatatccaccctcatttatagctggtgttatgtcactttctagtact
ttcccaccaattgctttacttcttgatgctcatcaaacagtgtccaatgagaagtctcaa
ggtgaggatgaaattttagctactggagaagataatgttgttgtgcattctggcatgaat
ctttcatctgaaaatgtgtcgtcgcctaccgagtttccttctttagatgccggtatacct
ggagtggagaatgtcttcgcaactgtgccgccttctgatgttcatgatgttggaaactta
gagaccggaatccctggcctggagagtgttggttgcagtgttgacttgtcagaaaccttg
gatgctccctcattggcttctcccgagataaaatcagaagaaggcagccaagagcaaatt
atgagtttggatgaaaggtcacccttgaacctagttccgtcaatatcaacagatagatct
gaggagttgagcccaaaagcaattgtcactgatgtgaatagcttggtgtcctcaacagct
acttcaattgtgttgcctgctcgtttaatcctgccaaagatgattgcacctgttgttgac
cttgcagatgaacaaaaggataatattcaaaagttgtgttttatgcgtatcattgatgca
tacaagcaagtagctgtagctggaggctcaaaagtccgattctcgatacttgcttattta
ggagtcgagtttcccttggaattagacccgtggaagcttttacagaagcatattttggtt
gactacactggtcatgagggacacgagttgacattgtgtgtcctctacaggttatttggt
gaggctgaagaggagcctgacttcttttcttcgacaactgccgctgctgtatatgaaaca
tttcttcaaacagtggcagaagcacttagagattcttttccaccttcagataaatcatta
agtaaattgcttggggaatcaccttatttgccaaagtcagttttaagaattctagaagac
atgtgttctcctggaaatggagataaagttgaaaaggagttacaaacagtgaatgcggat
agagttacacaaggtctcagtgctgtatggagtttgattcttctgaggcctcccattcga
gatacttgcttaaaaattgccttacagagtgcagtgcatcacttggaagaagtgcgtatg
aaggctatacgtctggtggcaaacaagctttatcctttgtcatccatttctctgcaaata
gaagattttgcgaaggaaaagctatgctcagtgatgagtgttgatgcaccggaagttacc
aatgccgaagggtccattgctgattcacaaaagggacttgatattgaaaaacttgcgaat
gagccatcatcattgagcggcagcactaaagatatctcagataattgtcagtcacacaca
tctgaaagtacttcatcagtttcagtttctgaggctcaaagatgcatgtcattgtacttt
gctctttgtacaaagaaacacactctctttcgccaaatatttgtcatttatcgaagcaca
tcaaaggccgtgaagcaggcagttcaccatcaaattcctatactagtgcgtacaatggga
tcatctccacatctacttgatatcatatcggatccaccatatggaagtgagaacctccta
atgcaggtgctgcagacgcttacggatggtacaaccccttctaaggagttagtatttact
gtttggaagttacatggttcaaaacttaaggatgctgcggttcttattccaatattacca
ttcttaacgaaagatgaggtaatgccagtttttcctaacatcgtgaatcttcctttggag
aagttccaagcagcacttggtcgcatattgcagggatcagcccaatctggcccggtactt
tctccagctgaagttttaattgctattcatggaattgatcctgatagagacggaattcct
ttaaaaaaggtcacagatgcatgcaatatttgttttgagcagcggcaaacttttactcaa
gaagttcttgccaaagttttgaatcaattggttgagcagattccccttcctttactgttc
atgcgtacagtcttacaagcaattggtgcttttcctacactagtggactttatcatgggt
attctctcacgccttgtgacgaagcagatatggaaatacccaaagttgtgggttggattc
ttgaagtgtctgcaattgactaaacctcaatcatttggtgttttacttcagctacctcca
gcacaactcgagattgcgttaaatagagcagcagcactaaaggcgccattgattgctcat
gctagccaggcagatatacagtcttcacttccaaggtctgtgctggttgtgctgggaatt
gcttcagattctcaggttccaagtcaggcacaaactagtcaaacacaggctgacagtgaa
acacagactgttgagacaagcaattcagccaaggattcagtgacagaaaaatctaaagaa
tcatctactgctacctga
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