Ligilactobacillus animalis: FAX13_06765
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Entry
FAX13_06765 CDS
T06852
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lani
Ligilactobacillus animalis
Pathway
lani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAX13_06765 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lani03019
]
FAX13_06765 (rnr)
03016 Transfer RNA biogenesis [BR:
lani03016
]
FAX13_06765 (rnr)
Enzymes [BR:
lani01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAX13_06765 (rnr)
Messenger RNA biogenesis [BR:
lani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAX13_06765 (rnr)
Transfer RNA biogenesis [BR:
lani03016
]
Prokaryotic type
tRNA degradation factors
FAX13_06765 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QCQ04322
LinkDB
All DBs
Position
complement(1420552..1422939)
Genome browser
AA seq
795 aa
AA seq
DB search
MEKEKIKESLINYFEAEPEKKFTVQELADKLEMNKAGQFNFVVQAVAQLEHDKVIVLDDD
GLFSAVKHESAPKFTGIFHANDRGFGFVTVDPEEPDYFINPTQTLSALNGDEVEVEMIAA
GDPAIGKRPEGKVTGIVQRNLTQVVGEFKPLEDENVPSGIIGTVHLRDKKLSNYRFLVED
TGLHPVEGEIVLADITTYPSSDLPGIIKGVATKVIGNVNDPGIDILQIVYQHDIPHKFPE
DVMEQVAQIPDHVTPEQKVGRRDLTGEQMVTIDSIESKDLDDAVSVRKLDNGNYHLGVHI
ADVSHYVTPNTPLDREAFERGTSVYLTDRVIPMIPAKLSNGICSLNPQVERLALTCEMEI
DPQGEVVSHEIFPSVIKTTERMTYKAINKILESDDQKEKERYRELVPMFEEMGELHKILL
KMRKRRGAIEFEDTEAKIIVDEKGHAIDVQLRERGTSERMVESFMLAANETVAAHYKNLH
VPFIYRIHETPKEEKIKSFFEMLSGLGVEVTGKVSDIQPKMLQKILKKVAGKPEEPMVSV
MLLRSMQQAKYSPEPLGHFGLAAKDYTHFTSPIRRYPDLMAHRMIHYYAENGIGEGSQAK
FQAELPEVSQHSSQAERRAIDAERDTDAMKKAEYMADHVGEEFDAVVSSVTKFGMFVELP
NTVEGLIHISEINDDYYIFVEKQMALVGRKTKQTYRIGQPIRVKLVNVNAEQKEIDFKLL
SLGKAPKSDLLEGVELPEMPPKRKFDRKNGDKRGQKRPFKRQNNGNGRRDNRHNSQRSNN
QNGRKPFYKKRRDKK
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaaaagataaaagaatcactaataaattattttgaagctgaacctgaaaag
aaattcactgttcaggagttagctgataaattagaaatgaataaagctgggcaattcaat
tttgttgtccaagcagtcgctcaacttgaacatgataaggtgatcgtcttggatgatgac
gggctttttagtgctgtaaagcatgaaagtgcacctaagtttacggggatctttcacgca
aatgaccgcggatttggttttgtaacggtcgatcctgaagaaccagattactttatcaat
ccaacgcaaacactttcagcgttgaatggggatgaagttgaggtcgaaatgatcgcagct
ggagatccagcgatcggtaaacgtcctgaaggtaaagttacagggatcgtccaacgtaat
ttgactcaagtcgtgggtgaattcaaaccacttgaggatgaaaatgtacctagtgggatc
attggaacagtccatttacgggacaaaaagttatccaactaccgctttttagtcgaagat
actggcttgcatcctgtcgaaggtgagatcgttttagccgatattacaacttatcctagt
tcagatcttccagggatcatcaaaggggtcgcaactaaggtcatcggtaatgtcaatgat
cctgggatcgatattttacagatcgtctatcaacatgatatcccacataaattccctgaa
gatgttatggaacaagtcgcacagatcccagatcacgtgacgccagaacaaaaagtcgga
cggcgcgatctgacaggcgaacagatggtaacgatcgatagtattgaatctaaagactta
gatgatgccgttagtgtccgtaaattagacaacggcaactatcatttaggggtacatatc
gctgatgtttcgcattatgtgaccccaaatacgccactagatagagaagcattcgaacgg
gggacttcggtttatttgactgaccgggtcattccgatgatcccagctaaattatcaaac
gggatctgttcattgaacccacaagttgaacgtttggctttgacatgtgagatggagatc
gatcctcaaggtgaagtcgtttcccatgagatcttcccaagtgtgatcaagacgacggaa
cgaatgacttataaagcgatcaacaagatcttagagtccgatgatcaaaaagaaaaagag
cgttatcgtgaattagtcccaatgtttgaagaaatgggcgaattgcataagatcttattg
aagatgcgcaaacgccgtggtgcgatcgaatttgaagatacagaagccaagatcatcgtg
gatgaaaaaggtcatgcgatcgacgtccaattgcgtgaacgcgggacaagtgaacgtatg
gtcgaatcctttatgttagccgccaatgaaaccgtggcagcacactacaagaatcttcac
gttccatttatttatcggatccatgaaacaccaaaagaagaaaagatcaaatctttcttt
gaaatgttatctggtctaggagtcgaagtaactggtaaagtgagcgatattcaacctaag
atgctacaaaagatcttaaagaaagttgccggtaagccagaagaaccaatggtatcagtg
atgttattgcggtcgatgcaacaagctaaatattcgccagaaccgttgggccactttggc
ttggctgctaaagactatacgcactttacgtcaccgatcagacgttatcctgacttgatg
gctcaccgcatgatccattactatgctgaaaatggtatcggtgaaggcagtcaagctaaa
ttccaagctgagttgccagaagtgagtcaacatagttcgcaagctgaacggcgcgcgatc
gatgctgaacgtgatacagatgcgatgaagaaggcagaatacatggctgaccacgtaggt
gaagaattcgatgctgtcgttagttcagttactaaatttgggatgtttgttgaattacca
aatacagttgaaggcctgatccatatcagtgagatcaacgatgattactatatctttgtt
gaaaagcaaatggctttagttggacgtaagacaaaacaaacttaccgcatcggtcaaccg
atccgtgtcaaattagttaatgtcaatgctgaacaaaaagagatcgactttaagctattg
agtttaggtaaagcaccaaaatccgatctattagaaggtgtcgaattacctgagatgcca
ccaaaacgtaaatttgatcggaaaaacggcgataaacgtgggcaaaagcggccattcaaa
cgtcaaaataatggtaatggtcgtcgagataatcggcataattcgcaacgttcaaacaat
caaaatgggcggaaaccattttataaaaaacgtcgcgacaaaaaatag
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