Ligilactobacillus animalis: FAX13_07375
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Entry
FAX13_07375 CDS
T06852
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lani
Ligilactobacillus animalis
Brite
KEGG Orthology (KO) [BR:
lani00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lani03009
]
FAX13_07375 (rlmD)
Enzymes [BR:
lani01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FAX13_07375 (rlmD)
Ribosome biogenesis [BR:
lani03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FAX13_07375 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRAM
Methyltransf_25
MTS
PrmA
TRM5-TYW2_MTfase
Cons_hypoth95
RrnaAD
Methyltransf_11
N6_N4_Mtase
IR75A_N
Methyltransf_4
Methyltransf_23
DUF829
N6_Mtase
Methyltransf_32
TRM
DOT1
Ubie_methyltran
QRPTase_C
Methyltransf_12
TPMT
Motif
Other DBs
NCBI-ProteinID:
QCQ04440
LinkDB
All DBs
Position
complement(1535759..1537132)
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AA seq
457 aa
AA seq
DB search
MKRKLPVVKNQKLEATIVDLTYQGMGVAKVDGYSLFCDDALPGEKVKLHVLKVGKNFGYA
KVIERLTTSPDRVTGKGKAYSQTGIAPLQHLAYPAQLKFKQKLVSDLLQKAHLSDLAVEQ
TLGMAEPYAYRNKAQVPVRELDGKLTAGFFKRGSHNFLPLTDFLIQDKRIDEVIQKVLAI
LQKYQVTAYDEATHSGILRHIMVRRGHYSKEVMVVLVTRTNKLPNKEAIVTEIMAACPDV
VSLQQNINSKQTNVILGDKTQVLAGQEYITDQLNGLKFEISAKSFYQVNPTQTEKLYQEA
IKRAGLTGNETVIDAYCGIGTISLSMAKHAKKVYGVEIVEAAIADAKKNATLNNLDNLEF
EVGNAEDWMATWQEQGIKPDVIMVDPPRKGLTQSLIESATKMQPQKIVYVSCNPATLVRD
LQSFMELGYDVTQPILPVDQFPQTAHVETVTVLERKK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggaaattacctgtagttaaaaatcaaaaattagaagcgacaatcgtggatctg
acttatcaagggatgggtgtcgctaaagttgacggatattcacttttttgtgatgatgct
ttacctggtgaaaaagttaaactccatgtgttaaaggtcggtaaaaattttggttacgct
aaagttatcgaacgcttaacgactagtcctgatcgggtgacagggaaaggcaaagcttat
tcacaaacagggatcgcaccattacaacacttggcttatccagctcagttgaaattcaaa
caaaaattagttagtgatctgttgcaaaaggcgcatctatccgatctagcagttgaacaa
actttggggatggcggaaccatatgcctatcgtaacaaggcccaagtcccagtccgtgag
cttgatgggaaattgacagctggctttttcaagcgcggtagccataatttcttaccgcta
acggacttcttgatccaagataagcggatcgatgaagtgatccaaaaagtgttggcgatc
ttacaaaagtatcaagtgacagcctatgatgaagctacgcatagtgggatcttacggcat
atcatggtgcgtcggggacattattctaaagaagtgatggtcgtgttggtaacgcggacc
aataagctacctaataaagaagcgatcgtaacagagatcatggcagcttgtcctgatgtg
gttagtttgcaacaaaatatcaattctaaacagaccaatgtgatcttaggtgacaagacc
caggtattagctggtcaagaatatatcacagatcagttgaatggacttaaatttgagatc
tcagcaaaatcgttttaccaagtcaacccaacgcagaccgaaaaactttatcaagaggcg
atcaagcgtgccggcttgaccggaaatgagaccgttattgatgcttactgtggtattggg
acgatctcattatctatggcaaagcatgctaaaaaagtgtatggggtcgagatcgttgaa
gctgcgatcgcggatgctaagaaaaatgcgacgttaaataatttggataacttggaattt
gaagtgggcaatgccgaagactggatggcaacttggcaagaacaagggatcaagccagat
gtgatcatggtcgatccaccacgcaaaggtttgacgcaaagtttgatcgaaagtgctact
aagatgcaaccacaaaagatcgtttatgtcagctgtaatccagcaactttagtccgtgat
ctgcaaagtttcatggaacttggatatgatgtgacccaaccgatcttgccagtcgatcaa
ttcccacaaacagcacatgttgagacggtaacggtgctggaacggaaaaaatag
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