Legionella antarctica: TUM19329_07460
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Entry
TUM19329_07460 CDS
T07713
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lant
Legionella antarctica
Pathway
lant02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lant00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TUM19329_07460 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lant03021
]
TUM19329_07460 (rpoD)
Transcription machinery [BR:
lant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TUM19329_07460 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_11
DUF4909
HTH_20
Motif
Other DBs
NCBI-ProteinID:
BCA94385
UniProt:
A0A6F8T152
LinkDB
All DBs
Position
complement(761998..763863)
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AA seq
621 aa
AA seq
DB search
MTINDQEQQSSQITKVISLGKEQCYLTYSQINDLLPNIVDTEHFDVIISMLEGMNIKVFE
QPPGDDELALLLNTEEVPDIEEAAMVLASVDKETGRTTDPVRMYMREMGTVELLTREGEI
RIAKRIEEGIYQVLRALAHYPETVQLVLDDYDRFNAEEIRLNEIISGFADSEEEIAPAAS
IGSMLDDVQQEVGLANDDEEDEDGEGGLAEVDDGPNPEQAKIYFDELRENFDHAMVALKE
HGRTNAKTLLLLETMSDSFLKLKLTSRQVDRLTRHFRQLRNHIREFERGIMRLCIEKARI
PRKLFIDTFPGQETDLKWLETLTSKNSKKLDMQRIEEYTDEILRLQSRLASFEIEYGLTI
SEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETG
REATPEELAEKMELSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDNNIESPIDMA
TAEGLREATLEILETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEKLRSFLEGDES
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaccataaatgaccaagaacagcagagctcgcagataactaaagtcatcagcctggga
aaagaacagtgttacctgacttacagtcaaatcaatgatctattgcctaatatagtagat
acggaacattttgatgtcattataagcatgctggaaggcatgaacattaaagtgtttgag
caaccaccaggtgatgatgaactggcactcctgttaaatacagaagaagtgcctgatatc
gaagaagctgcgatggtacttgcttccgtggataaagaaacaggacgtactactgatcca
gtacgtatgtacatgcgtgaaatgggtacagtagaattactgactcgagaaggtgaaatc
cgcatcgccaagcgtattgaagaaggtatttaccaggttctccgagcattggctcattat
ccggaaaccgtacaactggttcttgacgattacgatcgtttcaatgcagaagagattcgt
ctcaacgaaattatcagtggttttgcagactcagaagaagaaatagctcccgcagcgagc
atcggttctatgcttgatgacgttcagcaagaagtaggccttgccaatgatgacgaagaa
gacgaagatggcgaaggtggtttggctgaggttgatgacggccctaatccggaacaagcc
aaaatttattttgatgaactgcgtgagaatttcgaccatgctatggtcgctttaaaagag
cacggtcgtacaaatgcaaagacactcctgttacttgaaaccatgtcagactcgtttttg
aaactgaaattaacttcaagacaagttgacagattaactcgtcacttccgccagttacgt
aatcatattagagaatttgaacgtggtatcatgcgtctgtgcatagaaaaagcacgcatt
ccacgcaaactgtttatagataccttccccggccaggaaacagatcttaaatggttagaa
acactgaccagtaagaacagtaaaaaactcgacatgcaacgcattgaagaatataccgat
gaaattcttcgcctgcaatccagattggcctcttttgaaatagaatatggcttgaccatt
agtgaaattaaagacatcaaccgtaaaatgtccattggtgaagctaaagccagacgggct
aaaaaagaaatggttgaagccaatttacgtttggtaatttcgattgctaaaaaatacacc
aaccgaggcttgcaattccttgatttgatccaggaaggtaatatcggcttgatgaaagca
gtagataaatttgagtaccgtcgtggatacaaattctctacctatgcaacctggtggatt
agacaggccatcacccgatccattgcggatcaggcacgtactatccgtattccggttcat
atgattgagaccattaacaaactcaatcgtatttcccgccaaattctccaggaaacaggc
cgtgaagcaactcctgaagaattagcagaaaaaatggaattaagcgaagataaaattcgc
aaagtcctgaaaattgctaaagagccgatttcaatggaaacacccgttggtgatgacgat
gactcccacctgggtgactttatcgaagacaacaacattgaatcacccattgatatggca
acagctgaagggctacgcgaagcaacactggaaattctggaaacgctaacgccacgtgaa
gctaaagtactgcgcatgcgttttggtatcgaaatgaataccgaccataccctggaagaa
gtaggcaaacagtttgatgtgacccgtgaacgtattcgacaaatcgaagcaaaagcgcta
cgtaaactacgccacccatcacgttcagagaagttaagaagcttcctggaaggcgatgaa
agctaa
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