KEGG   Labrenzia sp. CP4: ACP90_00830
Entry
ACP90_00830       CDS       T04295                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
lap  Labrenzia sp. CP4
Pathway
lap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACP90_00830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lap03021]
    ACP90_00830
   03019 Messenger RNA biogenesis [BR:lap03019]
    ACP90_00830
Transcription machinery [BR:lap03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACP90_00830
Messenger RNA biogenesis [BR:lap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACP90_00830
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 S1CSD-TOTE-2 NACHT Fungal_virus_P2_C AAA Mor
Other DBs
NCBI-ProteinID: AMN51238
LinkDB
Position
173141..174406
AA seq 421 aa
MREMKLKDLKEKTPTELLQTAEELEVENASTMRKQELMFAILKNLAAQDVEIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVN
TINFEDPEKARHKVHFDNLTPLYPDERFRMEIEDPTIKDLSSRVIDLVAPLGKGQRALIT
APPRTGKTVFLQNIAKSITTNHPECYLIVLLIDERPEEVTDMQRTVDGEVVSSTFDEPAA
RHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKISDKRVYPA
IDIQRSGTRKEELLVPAERLKKTFVLRRILNPMGTVDAIEFLLDKLKQTKSNDDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaactcaaagacctaaaagaaaaaacaccgacagagctgctccagact
gctgaggagcttgaagtcgaaaacgccagcaccatgcgcaagcaggagctgatgttcgcc
atcctgaagaacctagctgctcaggatgtggagattatcggcgaaggcgtcgttgaagtc
cttcaggacggcttcggctttctccggtctccggatgcgaactatctgccgggcccggac
gacatttacgtctcgccctcgcagatccgccgcttttcgctgcggacaggggacaccgtt
gaaggccagatccgcagccccaaagagggcgaacggtattttgcccttctcaaagtcaac
accatcaatttcgaggatccggaaaaggcccggcacaaggttcacttcgacaacctgacg
ccgctttatccggatgaacgtttccggatggagatcgaagatccgaccataaaggatctc
tcctcccgcgttatcgacctggtagcacccctcggcaaaggccagcgtgcgctgatcacc
gcgccgccgcgcacaggtaaaacggtgttcctgcagaacatcgcgaagtccatcaccacc
aatcatccggaatgctatctgatcgttcttctgatcgacgaacgtccggaagaagtgacc
gacatgcagcgtacggtcgacggcgaagtggtttcctccacgttcgacgaaccggctgcc
cgccacgtgcaggttgccgaaatggtgatcgagaaggccaagcgcctgaccgaacatggc
cgggacgtcgtcatcctgctggactccatcacgcgtctgggacgtgcgtacaacaccgtc
gttccgtcttcaggcaaggtgctgaccggtggtgtggatgccaacgccctgcagcggccg
aagcgcttcttcggtgcggcccgtaacattgaagagggtggctcgctgacgatcatcgcg
actgcactgatcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggc
acgggtaactccgaaatcatcctggaccgcaagatctccgacaagcgtgtttacccggcc
atcgatatccagcgctccggtacgcgtaaggaagagcttctggtaccggccgaacgtctc
aagaagaccttcgtgctgcgccggatcctcaacccgatggggacggtggatgcgatcgag
ttcctgctcgacaagctcaagcagaccaagtcgaacgacgatttcttcgacagcatgaac
acttga

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