Labrenzia sp. CP4: ACP90_12620
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Entry
ACP90_12620 CDS
T04295
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACP90_12620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lap03021
]
ACP90_12620
03400 DNA repair and recombination proteins [BR:
lap03400
]
ACP90_12620
Enzymes [BR:
lap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACP90_12620
Transcription machinery [BR:
lap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACP90_12620
DNA repair and recombination proteins [BR:
lap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACP90_12620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AMN53146
LinkDB
All DBs
Position
2710059..2714198
Genome browser
AA seq
1379 aa
AA seq
DB search
MTQTFNGRKKVRKYFGSIRDVAAMPNLIEVQKASYDQFLQVDEMPGGGRKNEGLEAVFQS
VFPISDFAGTSLLEFVSFEFEAPKYDVDECRQRDMTFAAPLKVTLRLIVFDVDEDTGAKS
VKDIKEQDVYMGDMPFMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGLDGEEILNTFYKRIDYTRQ
KDGSWRMPFDGNRLKGTKASYDLIDADSGEVVIEGGRKITQRTIKQLEEKGVTALKVTDE
DLHGQYLAEDIVDMKSGEIYAEAGDEISGKLLEELVDRGYHELPMLDIDHVNTGPYIRNT
LSVDKNESREDALFDIYRVMRPGEPPTIDTAEAMFQSLFFDEERYDLSAVGRVKMNMRLD
VECADTVRTLRKDDILEVIRVLLELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKVKDGAVTNEVVYLSAMEEAKHYVAQSNAVYDDEGRFTEELITCRHAGENMMVPSDKV
DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVAR
DSGAAIGARRAGVVDQVDATRIVIRATEDLDPGKSGVDIYRLQKFQRSNQNTCINQRPLV
RVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSERIVSDDVFTSI
HLEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAELNPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLAEMLMDKTAIAGPKGSKKDTVLTGDVLNDFPRSQWW
QFATDDEKFMSEIEALRGQYDDSRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAVKR
KLQPGDKMAGRHGNKGVVSKINPCEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLG
WACRGMGNRIGEMYDEYRKSGEIGELRGKIVEIYGDNMKGDNVKEYDDEGIVRLAEQLKK
GVSIATPVFDGAREPDVVEALNIAGYDPSGQSVLYDGRTGEEFDRKVTVGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQRTDVPVIGEEETADAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaacgttcaacggtcgcaaaaaggtccgtaaatatttcggatcgatccgcgat
gtcgcggctatgcctaatctcatcgaggttcaaaaagcatcctacgaccagtttctgcag
gtcgacgagatgccgggcggtggccgcaagaatgaaggccttgaagcggtcttccagtcc
gtatttccgatctccgattttgcgggcacttcccttctggaatttgtttccttcgaattt
gaagctcccaaatacgacgtcgatgagtgccgccagcgcgacatgaccttcgcggctccg
ctgaaggttaccctgcgcctgatcgtgttcgatgtcgatgaagacaccggcgcgaagtcc
gtgaaagacatcaaggaacaagatgtctacatgggcgacatgccgttcatgaccgacaac
ggcactttcatcgtcaacggcaccgagcgcgtcatcgtttcccagatgcaccgttctccg
ggtgtgttcttcgaccatgacaagggcaagacccattcttccggcaagttgctgttcgca
gcacgcgtgatcccgtatcgcggttcctggctcgatatcgaattcgacgccaaggacatc
gtgcatgcgcgcatcgaccgtcgccgcaagatcccggttacgtcccttctgatggcgctt
ggtctcgatggtgaggaaatcctcaacacgttctacaagcgtatcgattacacccgtcag
aaggacggctcctggcgcatgccgtttgacggcaatcgtctgaagggcaccaaggcgtcc
tacgacctgatcgacgccgacagcggcgaagtggtgatcgagggtggacgcaagatcact
cagcgcaccatcaagcagcttgaggaaaaaggcgtcaccgccctgaaagtgaccgacgaa
gaccttcatggccagtacctggctgaagacatcgtcgacatgaagagcggtgaaatctac
gctgaagcaggcgacgagatttccggcaagctgctggaagaactggtcgatcgtggttac
cacgagctgccgatgctcgacatcgatcatgtcaacaccggtccgtatatccgcaacacc
ctgtcggtcgacaagaacgagtctcgcgaagatgctctgtttgacatctaccgcgtgatg
cgtccgggcgagccgcccaccattgataccgccgaggcgatgttccagtcgctgttcttc
gacgaagagcgctatgacctgtccgccgttggccgcgtgaagatgaacatgcgtctcgac
gtggagtgtgccgacaccgttcgcacgctgcgcaaggacgacatcctggaagtcatccgg
gttcttcttgaactgcgcgatggcaagggcgaaatcgacgacatcgacaacctcggcaac
cgccgtgttcgttctgtcggcgagctgatggaaaatcagtaccgcgtcggtctgctgcgc
atggaacgcgcgatcaaggaacgcatgagctctgtcgaaatcgacacggtcatgcctcag
gacctgatcaacgcgaagccggctgctgctgccgttcgtgaattcttcggctcctcgcag
ctgtcgcagttcatggaccagaccaacccgctgtcggaagtcacccacaaacgccgcctg
tcggcgcttggcccgggcggtctgacccgcgaacgcgcaggcttcgaagtccgcgacgtt
cacccgacgcactacggccgtatctgcccgattgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctggcaacctttgcccgtgtgaacaagtacggcttcatcgaaagcccg
taccggaaagtgaaagacggcgccgttaccaacgaagtcgtttatctttccgccatggaa
gaagccaagcactacgtggcccagtccaacgccgtctacgacgacgagggccggttcacg
gaagagctgatcacctgccgtcacgccggtgaaaacatgatggttccgtccgacaaggtc
gacctcatggacgtttcgccgaaacagctcgtgtccgtcgcggccgcgctcattccgttc
cttgagaacgatgacgccaaccgcgcactgatgggctcgaacatgcagcgtcaggccgtt
ccgctggttcgtgccgaagcaccgttcgtcggtacaggcatggagccgatcgtggcacgc
gattccggtgctgccatcggtgcccgccgcgctggcgttgtcgaccaggtggatgcgacc
cgtatcgttatccgtgcgaccgaagacctcgatccgggcaagtccggcgtcgatatctac
cggctgcagaagttccagcggtccaaccagaacacctgcatcaaccagcgtccgctggtg
cgtgtcggtgatcggatccacaagggcgacatcattgccgacggtccgtcgaccgatctc
ggtgatctggcgctcggccggaacgtgctcgtcgcgttcatgccctggaacggctacaac
ttcgaggattccatcctcctgtccgaacgcatcgtctccgatgacgtgttcacctccatc
cacctcgaggaattcgaagtgatggcgcgtgacaccaagcttgggccggaagaaatcacc
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtc
tacatcggtgccgaactgaacccgggcgacatcctggtcggcaagatcactccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcatcc
gacgttcgcgatacttccctgcgcctgccgccgggggtttccggtactgttgtcgaagtg
cgcgtcttcaaccgccacggcgttgaaaaagacgaacgcgcaatggcgatcgagcgcgag
gaaatcgagcgtctcgcaaaggaccgcgacgacgaacaggcgatcctcgaccgcaacgtc
tatggccgtctggccgagatgctgatggacaagaccgccattgccggcccgaagggctcc
aagaaggacaccgtactgaccggggacgttctcaacgacttcccgcgctcgcagtggtgg
cagtttgccaccgacgacgagaagttcatgtccgaaatcgaagctctgcgtggtcagtat
gacgacagccgcaagcgtctcgagcagcgtttcatcgacaaggtcgagaaactgcagcgc
ggtgacgaactgccgccgggcgtcatgaagatggtcaaggtcttcgttgccgtgaagcgc
aagcttcagccgggcgacaagatggccggccgtcacggcaacaagggcgtcgtctccaag
atcaacccgtgcgaagacatgccgttccttgaagacggcacgcatgtcgatatcgtgctg
aacccgctcggcgttccgtcgcgcatgaacgtcggtcagatccttgaaacccacctgggt
tgggcctgccgcggcatgggtaaccggatcggcgaaatgtacgacgagtacaggaagtca
ggtgagatcggcgaattgcgcggcaagattgtcgagatctacggcgacaacatgaagggc
gacaacgtcaaggaatacgatgacgaaggtatcgtacgcctggcggagcagctgaagaaa
ggcgtcagcatcgcgacgccggtcttcgacggtgctcgtgaacccgatgtcgtcgaggcg
ctcaacattgccggctacgacccgagcggccagtccgttctgtacgatggccggaccggt
gaagagttcgaccgcaaggtaaccgtgggctacatctacatgctgaagctccaccacctt
gtcgacgacaagatccatgcccgttccattggcccgtactcgctcgtcacccagcagccg
ctcggtggtaaggcacagttcggtggccagcgcttcggggaaatggaggtctgggcgctt
gaagcttacggtgcagcctacacgctgcaggaaatgctcaccgtcaagtcggatgacgtt
gccggccgtacgaaggtctatgaggccatcgttcgtggcgacgacaccttcgaggcaggc
attccggaaagcttcaacgtgcttgtgaaggaaatgcggtccctgggtctcaacgttgaa
ctgcaacgaaccgatgtccccgtgatcggcgaggaagaaactgcggacgccgcagaataa
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