Labrenzia sp. CP4: ACP90_16020
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Entry
ACP90_16020 CDS
T04295
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03410
Base excision repair
lap03430
Mismatch repair
lap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ACP90_16020
03430 Mismatch repair
ACP90_16020
03440 Homologous recombination
ACP90_16020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lap03400
]
ACP90_16020
DNA repair and recombination proteins [BR:
lap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ACP90_16020
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ACP90_16020
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACP90_16020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AMN53681
LinkDB
All DBs
Position
complement(3454363..3456180)
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AA seq
605 aa
AA seq
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MLGQSGEDDRRLVLGVARSANDNAWRERLSGADLRTAMAISQVHGLPDVLARVMAARGVQ
ADEATGFLEPSLKLLMPDPSGLVDMDAAVARVADAVQAGRKIAIFGDYDVDGATSSAIFA
KYLQWLGLDPVIHIPDRVIEGYGPNGPAIEHLRHGGADLLVTLDCGSTSFEAFETARQLD
LDVVVIDHHQVGETLPAVEALVNPNRQDDLSGQGHLAAVGVTFLFLVGLNRELRRRGVFQ
GRQEPDLMALLDLVALGTVCDVVPLQGLNRAYVTRGLAVMHQRRNYGLTALADTARVSGK
PAPYHLGFLIGPRINAGGRIGDAALGARLLTTEDPHEARAIAERLDQLNTERQSMEAVML
EQAGAEAAMAIQARDPAVLLTGSDDWHPGIVGLIASRLKEAHRRPSFAVAFDETGKGTGS
GRSIPGVDLGKAVRRAVDEGLLEKGGGHAMAAGLTVLREKTADLEAFFNDVLKDDVEAAS
ANRELKIDAALTATGANLDFLELLEKAGPYGAGHAEPVFAFPAHRISFADVVGKGHVRAS
ITSGDGTALKAICFKADDKPHGQMLLQGRGQSLHVAGTLSIDTWQGTPKVQLRILDVADP
QKTRL
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgggacaatccggggaagacgacaggcggctcgtacttggggtcgcccgttccgca
aacgacaacgcctggcgcgagcgcctgagtggcgctgacctgcgaaccgcgatggcgatt
tcgcaggttcacggattgccggacgtgctggcgcgtgtcatggctgcgcgcggcgttcag
gccgacgaggcaaccggcttcctggagccgtcactcaagctgctgatgcccgatccttcc
ggtctggtcgatatggacgccgccgtggcaagggtcgcggatgcggtccaggctggtcga
aagattgcgatcttcggcgactatgatgtcgacggggcgacatcgtcggcgatattcgcc
aaatacctgcagtggctcggccttgaccctgtgatccatattccggatcgggtcatcgaa
ggatacggaccgaacggtccggccatcgaacatcttcgccatggcggggctgatctgctg
gttacgctcgactgcggcagcacgtcgtttgaagcttttgaaactgcccggcaactcgat
ctcgacgtcgtggtcatcgatcaccaccaggttggcgaaacgcttccggcggttgaggcg
ctcgtcaatcccaaccggcaggatgatctgtcggggcaggggcatttggcagctgtcggc
gtcacgttcctgtttcttgtcggcctgaaccgcgagttgcggcgtcgcggggttttccag
ggcaggcaggagccggatctcatggcgctgctcgatctggtggcgcttggtaccgtgtgc
gacgtcgttccgttgcagggcctaaacagggcctatgtgacacgtggccttgcggtgatg
caccaacgccgcaattacgggctgactgcgcttgcggacacagcgcgcgtgagcggaaag
ccggcgccttatcatctgggtttcttgataggcccgcggatcaacgcgggaggacgtatt
ggcgacgctgcactgggcgcgcgccttctgacgacggaagacccgcacgaagcacgggca
atcgccgagcggctggaccagctcaataccgaacgtcagtccatggaagcagtgatgctg
gaacaggccggcgcagaagccgcaatggcaatccaggcacgtgatccggcggttctcctg
accggttccgacgattggcaccccgggattgttggactgattgcctctcggctcaaggaa
gctcaccgcaggccttcctttgcggtcgcctttgatgaaaccggcaaggggacaggttca
gggcgctccatccccggtgttgaccttggcaaggccgttcgcagagcggttgacgaaggt
ttgctcgaaaagggtggtgggcacgccatggcggcagggcttacggttctgcgggagaag
accgccgacctggaagcgtttttcaacgatgtgctgaaggacgacgtcgaggcggcaagt
gcgaaccgggaactgaagattgatgccgcgctgacggcaacgggcgcaaatctcgatttt
ctggagttgctggaaaaggcggggccctatggtgccggtcatgctgaaccggtgtttgcc
tttcccgcccaccggatttccttcgccgatgtggtcggtaagggacatgtccgagcctcg
atcacttctggtgacgggactgcgttaaaggcaatctgcttcaaggcggacgacaaaccg
cacggtcagatgttgttgcagggccgggggcagtcgctgcatgtggcaggtacgctgtca
atcgacacctggcaggggacacccaaggtgcaactgcgcatccttgatgtcgcggatccg
cagaaaacccgcctttga
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