Labrenzia sp. CP4: ACP90_16955
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Entry
ACP90_16955 CDS
T04295
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lap
Labrenzia sp. CP4
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lap03016
]
ACP90_16955
Enzymes [BR:
lap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ACP90_16955
Transfer RNA biogenesis [BR:
lap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ACP90_16955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AMN53830
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All DBs
Position
3685787..3686971
Genome browser
AA seq
394 aa
AA seq
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MHVITKTKDLAAACQRLAAHDYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGL
DLEPFFELMRDGNVTKVFHAARQDIEIIYHLGELIPAPLFDTQVAAMVCGFGDSISYDQL
VYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAYQFLKANLAEQDRSHWVQD
EMQVLTSINTYRTDPEQAWKRLKLRVRKPVELAVMMEVAAWREREAQSRDVPRSRVIKDD
AIYELAAQQPQDAESLARLRTIPRGFERSKSADEILKAVRRAVSLPKNEMPKLPKGRQAP
DGSAAAVDLLKVLLKLVSEAHGVAAKVIATVDDLEKIAADDAADVAAMKGWRRELFGETA
LKLKRGEVALAFQDRQIVAIDQPRQANVESEAAE
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgattacaaaaacaaaagatctcgccgctgcgtgccagcgtcttgccgctcat
gattacgtgactgtcgacacggagtttctccgtgagacaaccttttggcccaagctctgc
gtcatccagatggcagggcctgacatggccttcatcgtcgatgccctgtccgaagggctg
gaccttgagccctttttcgagcttatgcgcgacggcaatgtgacaaaagtttttcacgct
gcccgccaggacatcgaaatcatctatcatctgggagaacttatcccggccccgctgttc
gacactcaagtcgcggccatggtttgcggctttggtgattccatttcctacgaccagctt
gtctacaaggtgaccggtgcccggatcgacaagtcgtcccgcttcaccgactgggcccgc
aggccgctgacggcaaagcaactggattatgcgctggcggacgtcacgcatctgcgcgac
gcctatcagttcctgaaagcgaatctcgccgaacaggaccgcagccactgggttcaggac
gaaatgcaggtgctgacatccatcaacacctaccgtacggatcccgaacaggcctggaaa
cggctgaagcttcgggtgcgcaagccggttgaactggccgtgatgatggaagttgcagcc
tggcgcgaacgggaagcgcaatcacgcgacgttccgcgcagccgcgtcatcaaggacgat
gccatctacgagctcgcagctcagcagccccaggacgcagaatcgctcgcgcgcctcagg
accattccgcgcggcttcgaacgttcaaaatccgcagacgagatcttgaaagccgtcaga
cgggccgtttcgcttcccaagaacgaaatgccgaaactaccgaaaggtcgacaggcaccg
gacgggtcagcggccgctgtcgatctcttgaaggttcttctgaaacttgtcagcgaggca
catggcgttgctgccaaggtcatagccacggtggatgatcttgaaaagattgccgcagat
gatgctgccgatgtggcagccatgaagggctggcggcgcgagcttttcggcgaaaccgcg
ctcaagctgaagcgcggtgaagtcgccctcgccttccaggatcgtcagatcgtcgcgatt
gatcagccgcggcaggcgaacgttgaatcggaagcggcagagtaa
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