Labrenzia sp. CP4: ACP90_21570
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Entry
ACP90_21570 CDS
T04295
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP90_21570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lap03019
]
ACP90_21570
03009 Ribosome biogenesis [BR:
lap03009
]
ACP90_21570
Enzymes [BR:
lap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACP90_21570
Messenger RNA biogenesis [BR:
lap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACP90_21570
Ribosome biogenesis [BR:
lap03009
]
Prokaryotic type
rRNA helicases
ACP90_21570
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMN54559
LinkDB
All DBs
Position
4701195..4703312
Genome browser
AA seq
705 aa
AA seq
DB search
MTDLTSLAPALKAALAKRGYENLTSVQESVLSDAPPEADLLVSAQTGSGKTVAFGLALAP
TLLDGQDSLGQAGAPIALAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRTERRT
LERGVHIVVGTPGRLRDHIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDTAPQDR
RTLMFSATVPKPIAELAKRFQKDAVRLSTINAREQHGDIDYVAHPVAPNERENAIINVLR
QHEAEKAIVFCSTREAVSRLTSRLANRGFSIVSLSGELSQEQRSSALAAMKDGRARVCVA
TDVAARGIDLPNLDLVIHADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERVL
HFAGITATWKGAPTADDIRAKDKERLLADPALKVELEEEELAIANELLALHSPEQLAAAF
VKLRQSRLPAPEEVSDLDETSLRGRDAGSRGGRNAEITGKFEDGIWFSLSLGHRQRAEPR
WILPMICRAGHVTKKEVGAIKIFQNELYFEIAGSHGQRFADVVKREGTGEENATITLLDA
RGGKIPAPPKEDGFRRDRSDRSGPPKRRPRGADAPDYESLGAEDSMKSGRPKREGRGKFD
GPKGKFDGPRGKFDGPRGKSRRRSGDDDFVPHHPAYEPLNTKELARDLDGGERAPKRKER
AADGPDGDRRKPRTRSAANSAPPKKKAAKKNKPSRAERKASKTKP
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttgacttctctcgccccggcgctgaaggccgcgctggcgaaacgtggctat
gaaaacctcacctccgtgcaggaaagcgttctcagcgacgcgccgccggaagccgacctt
ctggtatctgcgcagaccggatccggcaagaccgttgcctttggcctcgcacttgccccg
acgctgcttgacggccaggacagtctcggccaggcaggcgctcccattgcgctggccatt
gccccgacccgcgaacttgcccttcaggtgaaggaagaactgacctggctttataatgaa
gccggtgccgtaacggcctcttgtgtcggcggcatggacccgcgcaccgaacggcggacg
ctggaacgcggtgttcatattgtcgtcggcacgcctggccgcctgcgcgaccatatcgaa
cgtggcgcactggacctgtcggagatcaaggctgtcgtgctcgacgaagccgacgagatg
ctcgatatgggcttccgcgaagacctggaattcattctggataccgcgccgcaggaccgg
cgcacgctgatgttctcagcaacggttccgaagccgattgcagaactcgccaagcgcttc
cagaaagatgccgttcgactgtcgaccatcaacgctcgcgaacagcacggcgatatcgac
tacgtcgcgcatccggttgctccgaacgagcgcgaaaacgccatcatcaacgtgctgcgc
cagcatgaagcggaaaaggcaatcgtcttctgctcgacgcgtgaagctgtcagccggctg
acatcgcgcctcgcgaaccgtggtttctccatcgtgtccctttccggcgagctcagccag
gaacagcgttccagcgcgctggccgcgatgaaggatggccgcgcccgtgtgtgtgtggca
accgacgttgctgcacgcggcatcgacctgccgaacctcgatctggtgatccacgccgac
ctgccgacaggcaaggctgccctgctgcaccgttccggccgtacgggacgtgccggccgc
aagggtacctgtgtgctgatggttcccttcccgcgccgccgccaggcagagcgcgtgctg
cattttgccggcatcactgcgacctggaagggtgctccgaccgccgacgacattcgtgcc
aaggacaaggaacggcttctggccgatcccgcactcaaggtggaactggaagaagaagaa
ctggcgatcgcaaacgagctgcttgcgcttcacagcccggaacagcttgctgccgccttc
gtcaagctgcgtcagtcgcgtctacccgctccggaagaagtctccgatctcgatgagacc
tcgctccgaggcagggatgccggctcgcgcggcggtcgcaatgcggaaatcaccggcaag
ttcgaagacggcatctggttctcgctgtcgctcggccaccgccagcgcgcagaaccgcgc
tggattcttccgatgatctgccgtgccggtcacgtcaccaagaaggaagtcggcgcgatc
aagatcttccagaacgagctctacttcgaaatcgccggcagtcatggccagcgcttcgcc
gatgtggtcaagcgcgaaggcacgggcgaggaaaatgccaccatcacactgcttgatgca
cgtggtggcaagatccccgccccgcccaaggaagacggcttccgccgtgaccggtccgac
cgttctggtccgcccaagcgccgtccgcgtggtgcagatgcaccggattacgaaagcctc
ggtgccgaagacagcatgaaatccggccggccgaagcgcgaaggcagaggcaagttcgac
gggcccaaaggcaaattcgacgggccgcgcggcaagtttgacggacctcgtggcaaatcc
cgccgccggtccggtgacgacgatttcgtgccgcaccaccctgcctacgagcctctgaac
accaaggaattggctcgcgacctcgacggcggcgagcgcgctcccaagcgcaaggaacgt
gccgcggatggcccggacggcgaccggcgcaagccgcggacccggtcggctgccaactcc
gcgccgccaaagaaaaaggccgcaaagaaaaacaagccgtcgcgcgccgagcgcaaggcc
tcgaaaacaaagccctga
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