Labrenzia sp. CP4: ACP90_22640
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Entry
ACP90_22640 CDS
T04295
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP90_22640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lap03019
]
ACP90_22640
Enzymes [BR:
lap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACP90_22640
Messenger RNA biogenesis [BR:
lap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACP90_22640
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMN54735
LinkDB
All DBs
Position
complement(4942816..4944120)
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AA seq
434 aa
AA seq
DB search
MTDFQSLGLSNGLVTAVTENGYDAPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPL
IDRLLLEKKRAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIK
RLSKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADK
RQTLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNDKGDFLVDQL
RDKPDGLSLVFCRTKHGAERLMRKLAHSGISAGSIHGNKSQNQRDRAIKDLREGTINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQI
EKLIGIDITVAGGEIPPMSAAAGRAKRGGNRNGNSKPGGKKPFRKQSSSGANDNASENRR
PPRRRRQNTRRDAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgactttcaaagcctgggactctccaatggccttgtgactgccgttaccgaaaac
ggctatgacgctccgacaccgatccagcaaaaagccatcccgttgatcctggaaggccgg
gacctcatgggtctggcacagacgggtacgggcaagacggctgctttcggcctgccgttg
atcgaccggcttctcctggagaagaaaagagccgttcccaagggcacacgggcgctgatt
ctggccccgacccgcgaactggtgaaccagatcgcaaagaacctgatttccttcctgaag
catacgccgctgcgggtttcctccgttgtcggtggtgtgtccatcaacggccagatcaag
cggctctcaaagggtaccgacattctggtggcaacaccgggccggctgctggacctggta
gatcgtgaagcgatcgacctgcgcaccgcttcctacctggtgctcgacgaagccgaccag
atgctcgatctgggcttcattcatgccctgcgccggatcgcgggcctggtggccgacaaa
cgccagaccttgctgttctccgcgaccatgccgaagcagatcaacgagctggcacagtcc
tatctgcgcaacccggagagggtcgaagttgctccggccggcaagaccgctgacaaggtt
acccagtctgttcatttcatggacaagaacgacaagggcgacttcctggtcgatcagctt
cgtgacaagccggacgggctgtcgctggtgttctgccgcacaaagcacggtgcggaacgg
ctgatgcgcaagctggcgcattccggaatttccgctggctcgatccatggtaacaagagc
cagaaccagcgtgaccgcgcgatcaaggacctgcgggaaggcaccatcaacgtgctcgtg
gcaaccgatgttgccgctcgcggcattgatatcccgggtgtcagccacgtttataacttc
gagctgccggaagttgcagaagcctacgttcaccgaattggccgtacggcccgcgccggt
gcggaaggtgaggcgattgccctgtgtgctccggaggaaatcggtctcttccgccagatc
gagaagctgatcggtatcgatatcacggttgccggtggtgaaattccgccgatgtccgcg
gctgccgggcgcgcaaagcgcggcggaaaccggaatggcaacagcaagccgggcggcaag
aagccgttccgcaagcagtcgtcctccggcgccaacgacaacgcgtccgaaaaccgtcgt
cctccgcgtcgccgtcgtcagaacacacgcagagatgcagcctga
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