Labrenzia sp. CP4: ACP90_25690
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Entry
ACP90_25690 CDS
T04295
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP90_25690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lap03019
]
ACP90_25690
03400 DNA repair and recombination proteins [BR:
lap03400
]
ACP90_25690
Enzymes [BR:
lap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACP90_25690
Messenger RNA biogenesis [BR:
lap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACP90_25690
DNA repair and recombination proteins [BR:
lap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACP90_25690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
MGS
Motif
Other DBs
NCBI-ProteinID:
AMN56279
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All DBs
Position
5586000..5587841
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AA seq
613 aa
AA seq
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MQHAVAPTVRPKPLAVLQKVFGYSSFRGKQQAVIETLVDGNDAVVLFPTGAGKSLCYQIP
ALCRRGVGIVVSPLIALMKDQVGALRAAGVQAAALNSTLSPEEQDSIRSALRRGEIDLLY
VTPERLGTESFRKFLDTLQIALFAIDEAHCVSQWGHDFRPEYMSLSCLRDRYPGVPRVAL
TATADPHTQKDILARLQLEDAAVFSTSFDRPNIRYEIVERTNQRQQLLDFLKKHSGESGI
VYCLSRAKVEDIAEWLTSKGIRALPYHAGLPAEQRSANQDAFLLEEGLCLVATVAFGMGI
DKPDVRYVAHLDLPSSVEAYYQETGRAGRDGAPSEAFMAYGMADLVQRRRMIAEGDAPEE
VKRAENAKLNALLGICETAGCRRQALLAHFGETYPKPCGNCDTCLSPVETWDGTEAAQKL
MSAIYRTGQRFGTAHVIDVLLGKTNEKSTRFGHDTLSVFGIGQDVPQKTWQSIARQLVAA
GYVDVDHAQFGALVLTEKARSVLRGDEKLALRKDRSAAGLKRTSSSRTASIADELDHEDR
LLFERLRRLRTQIARDQGVPPYVVFTDATLAGISAARPVTEDALLAVSGVGQSKLEKYGE
AFLELVEAFEAGV
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcatgccgttgctccgaccgtgcgtccgaagccgcttgcggttctgcagaaggtt
ttcggctacagcagcttcaggggcaaacagcaggcggtgatcgaaacgcttgtggacggc
aacgacgctgtcgttctttttcccaccggcgcaggcaagtcgctctgttaccagatcccg
gcactgtgccggcgtggggtcggcattgtcgtctcgccgctgatcgcgctgatgaaagac
caggtcggtgcgcttcgcgccgctggcgttcaggccgcggctctcaattccacgctgtca
cctgaagaacaggacagcattcgcagtgccctgcgccgcggtgaaatcgacctgctctac
gtgacaccggagcggctgggcaccgagagcttccgcaagttcctggacacgctgcagatt
gccctttttgccatcgatgaagcgcattgcgtcagccagtggggacatgacttccgtccg
gagtacatgtcgctgtcctgtctgcgcgaccgctatccgggcgtgccgcgtgtggcgttg
accgcgactgccgacccgcacacccaaaaagacattctggcccgcctgcaactggaagac
gccgccgtcttttccaccagcttcgaccggcccaacatccgctacgagattgtcgagcgc
accaaccagcgccagcagctgctggatttcctgaagaagcactccggcgagagcggcatc
gtctattgcctgtcgcgggcaaaggtcgaggacatcgccgaatggctgacctctaagggc
atcagggccctgccctatcacgccggattgcccgcggaacagcgctccgccaaccaggat
gcgtttctgctggaagaagggctgtgcctggtggcgacggttgccttcggcatgggtatc
gacaagccggatgtgcgctatgtcgcgcatctggatctgccgtcttcggtcgaggcctat
taccaggaaaccggccgcgcaggccgcgacggcgctccttccgaagccttcatggcttac
ggcatggcagatctggtgcagcgccggcgcatgattgccgagggcgatgctcccgaggag
gtcaagcgtgcggaaaatgccaagctgaacgcgcttctcggcatttgtgaaacggccggt
tgccgtcgtcaggccctgctggcccatttcggcgagacctaccccaaaccctgtggcaac
tgcgacacctgcctgtccccggtggagacctgggacggcacggaagctgcccaaaagctg
atgtcggcgatctatcgtactggccaacgtttcggcacggcgcatgtcatagatgtgctt
ctgggcaagaccaacgagaaaagcacccgcttcggccatgacacgctgtcggttttcgga
attggccaggacgtgccgcagaagacctggcagtcgattgcccgtcagcttgtcgccgca
ggctacgtcgatgtcgaccatgcccagttcggtgctctggttctgacggaaaaggcgcgg
agcgtccttcgcggtgacgagaagctcgccttgcgcaaggaccgaagcgcggcaggcctg
aaacggacgagttcttcacgtacggcctccatcgccgatgaactggaccatgaagacagg
ctgctgtttgaacgcttgcgcaggctgcggacccagattgcccgcgatcagggcgtaccg
ccctatgtagtgttcacggatgcgacgctggccgggatatccgctgcgcgcccggtgacc
gaagatgcgctgctggccgtttccggtgtcggtcagtccaaacttgaaaaatacggcgag
gcgttcctcgagctggtcgaggcatttgaagccggcgtatga
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