Labrenzia sp. CP4: ACP90_26100
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Entry
ACP90_26100 CDS
T04295
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP90_26100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lap03019
]
ACP90_26100
03016 Transfer RNA biogenesis [BR:
lap03016
]
ACP90_26100
Enzymes [BR:
lap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ACP90_26100
Messenger RNA biogenesis [BR:
lap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACP90_26100
Transfer RNA biogenesis [BR:
lap03016
]
Prokaryotic type
tRNA degradation factors
ACP90_26100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AMN56294
LinkDB
All DBs
Position
complement(5673920..5676049)
Genome browser
AA seq
709 aa
AA seq
DB search
MFDIHRVEVEWGGRPLVLETGKVARQADGAVMATYGETKVLATVVSAKSPKPGQDFFPLT
VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH
DLENAPDILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESSLDLVVA
GTNDAVLMVESEAKELNEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPRELVLPDHSE
LFGKVKALAEAELVAAYKITSKTDRKNAVDAAKAKVVEALITNAAEGEAVESTVLGEQFK
KLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGT
GEDEQFIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMMPPH
HEFPYTVRVVSEVTESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRFAVL
SDILGDEDHLGDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGEMS
KAITEARAELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIA
SADGKAIKAAVNWINSIAAEPEVGMIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLAPKK
VAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEIEKKEEAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatattcatcgtgtagaagtcgagtggggcggacgcccgctcgtcctcgaaacg
ggcaaggttgcccgtcaggccgacggcgccgtcatggcgacctatggcgaaacgaaggtt
ctggcgacggttgtttccgccaagtctccgaagccgggccaggattttttcccgctcacc
gtgaactaccaggaaaaggcatttgccgctggtaagatcccgggcggctacttcaagcgc
gaaggccgtccgtcggagcacgagacgctgacgtcccgcctgatcgaccgtccgatccgc
ccgctgttcgcagacggctacaagaacgacacccaggtggtgatcaccgttctgtcgcac
gatctggaaaacgctccggacatcctggcgatggtggcttcttccgctgctctgaccctt
tccggcgttcccttcatgggcccgatcggcggcgcgcgcgttggctacatcaacggcgaa
tacgtgctgaacccgctggttgatgacatgccggaatcctctctggatctggttgttgcc
ggtaccaatgacgccgttctgatggttgaatccgaagccaaggaactgaacgaagacatc
atgctcggcgctgtgatgttcggccacaagggcttccagccggtgatcgacgcgatcatc
aaactggctgaaaccgctgccaaggaaccgcgcgagctggtcctgccggatcattccgag
ctgttcggcaaggtcaaggctctggccgaagccgagcttgttgccgcttacaagatcacg
tccaagaccgaccgcaagaacgcagtcgacgctgccaaggcgaaggtcgttgaagcgctg
atcaccaacgctgccgaaggcgaagccgtcgaaagcaccgttctgggcgagcagttcaag
aaactggaagcggaaatcgttcgtggcgcgatcctcgacaccggcacccgtatcgacgga
cgtgacctgtcgactgtccgtgcgatctcgtccgaagtcggcattctgccgcgtgcgcac
ggttccgcactcttcacccgtggtgaaacccagggcctggtcgttgccaccctcggcacc
ggcgaagacgagcagttcatcgatcttctggaaggcaccgtgaagtctcacttcatgctg
cactacaacttcccgccttactccgtcggtgaaaccggccgcatgggctccccgggacgc
cgcgaaatcggtcacggcaagctggcatggcgtgcgatcaacccgatgatgcctccgcat
cacgagttcccgtacaccgtccgcgtcgtttccgaagtcaccgaatccaacggttcgtct
tccatggcaaccgtctgcggcacttcgctgtcgctgatggacgccggcgttccgctgaag
gcaccggttgccggtatcgccatgggcctgatcaaggacggcgaccgttttgcggttctg
tccgacatcctgggcgatgaagatcacctcggcgacatggacttcaaggtcgccggtacc
caggacggtatcacctcgctgcagatggacatcaagatcgacggtattaccgaagagatc
atgaaggtcgctctgggtcaggccaaggacggccgtatccacatcctcggcgaaatgtcc
aaggccatcaccgaggctcgtgccgagctcggcgaacatgctccgcgcatcgaagtgatg
aagatcccggtcgacaagatccgtgaagtcatcggttcgggcggcaaggtcatccgcgaa
atcgtggaaaagaccggcgcgaaggtcaacatcgaagacgacggcaccgtcaagatcgca
tctgccgacggcaaggcgatcaaggctgccgtcaactggatcaactccatcgccgctgag
ccggaagtgggcatgatctacgaaggcaccgtcgtcaaatgcgttgatttcggcgcattc
gtgaacttcttcggtgcgaaggacggtctggtccacatctcccagctggctccgaagaaa
gttgccaaggtcaccgacgtgatcaaggaaggcgacaaggtctgggtcaagctcatgggc
ttcgacgagcgcggcaaggtccgcctgtccatgaaggttgtcgaccaggaaaccggcaag
gaaatcgaaaagaaggaagaagctgaataa
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