Lactobacillus apis: DKL56_00025
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Entry
DKL56_00025 CDS
T06844
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
lapi
Lactobacillus apis
Brite
KEGG Orthology (KO) [BR:
lapi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lapi03032
]
DKL56_00025 (gyrB)
03400 DNA repair and recombination proteins [BR:
lapi03400
]
DKL56_00025 (gyrB)
Enzymes [BR:
lapi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DKL56_00025 (gyrB)
DNA replication proteins [BR:
lapi03032
]
Prokaryotic type
DNA Topoisomerases
DKL56_00025 (gyrB)
DNA repair and recombination proteins [BR:
lapi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DKL56_00025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
PG_isomerase_N
Motif
Other DBs
NCBI-ProteinID:
AWM73006
LinkDB
All DBs
Position
4695..6659
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AA seq
654 aa
AA seq
DB search
MADKNNEDLNQIEKYEKEADKYDASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII
DNGIDESLAGFATKIEVTINEDGSVTVQDDGRGIPVDIEKKTGRPALETVFTVLHAGGKF
GGGGYKVSGGLHGVGASVVNALSTKLDVTTMRDGKKYYIDFNHGRVDHEMKMTGSVPLSE
HGTIVHFYPDPDIFTETTSFDDQILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYHYEG
GIQEYVSFLNRDTEVLFDKPIYVEGDFNDINVEVSLQYTQGYKTTLMTFANNIHTYEGGM
HEAGFKTALTRVVNDYAHKTKLLKDNDDNLSGEDIREGMTAIVSVKHPNPQFEGQTKTKL
GNSDARTAVDRAFSETFTSFLMENPQVGRKIVEKAQLAERARTAAKRAREVTRKKSGLEI
ANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR
ILANEEIRSLFTALGTGFGADFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLVYNYMRPM
IDKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDADQL
WDTTMNPENRRLDRVSPEYAKNVDEVFELLMGNEVAPRRSFIENNAKYVENLDA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaaataacgaagacctcaatcaaatagaaaaatatgaaaaagaagccgat
aagtatgatgccagtcagattcaagtattaggtggacttgaagctgttcgtaaacggccc
ggtatgtatattggctcgactagctctcaaggccttcatcacttagtttgggaaataatt
gataacggaatcgatgaaagtttagcaggttttgcgacaaaaatcgaagttaccatcaac
gaagatggtagtgttaccgttcaagatgatggacgtggtattccagtcgatattgaaaag
aagactggtcgtcctgcgcttgaaactgtttttacagttcttcatgccggtggtaaattc
ggcggtggcggatataaggtttctggtggtttgcatggtgttggggcttcagtagttaac
gctttatctacaaagcttgatgttacaacaatgcgtgatggcaaaaagtactatatcgac
tttaaccatggacgcgtagaccatgaaatgaaaatgacaggttcggttccactttcagag
catggtacaattgttcatttttatccagatcctgatattttcactgaaaccacgtctttt
gatgatcaaatcttaaagaacagaattcgcgaacttgcctttttaaacaagggtctaaaa
ttaacctttacggataagcgtaaggacagtgcagaaacagacgtttatcactatgaaggt
ggtattcaagaatatgtttcatttttgaatcgcgacacagaggttttgtttgataaaccg
atatatgttgaaggggactttaatgacattaatgtcgaagtttcgttgcaatatacgcaa
ggctataaaacaactttaatgacctttgctaacaacattcacacttatgaaggtgggatg
catgaagcgggctttaagaccgctttaacccgtgtagttaatgactatgcgcacaagact
aagttgttaaaagataatgatgataacttgtcaggtgaggacattcgtgaagggatgaca
gcgattgtttcagttaagcacccgaatccgcaatttgaggggcaaaccaagactaagctt
ggtaactccgatgctagaacagctgtagaccgtgctttttcagaaacattcacctcgttt
ttgatggaaaatccgcaggtaggacgcaagattgttgaaaaagcgcaattggctgaaaga
gccagaactgctgccaaaagagcacgtgaagttacgagaaagaaatctgggctggaaatt
gccaatttacctggtaagttagcagataatacaagtaacgatccaagtatttcagaatta
tttatcgttgagggtaactcagccggtggttctgcaaagcaaggtcgttctcgtttaaca
caagctattttgccaattcgaggaaaaatattaaacgttgaaaaagcttcaatggaccga
attttggctaacgaagaaattcgttcactgtttaccgctttgggaacaggttttggtgca
gattttgacgtttcaaagtctcgttatcacaaattaatcatcatgacggatgccgatgtc
gatggtgcacacattagaaccctgttattaacgctggtttacaactacatgcgtccaatg
attgataagggctatgtttatattgcacgtccgcctctatatcaagttcgtcaggggaag
gtgattaagtatcttgataccgatgaagagttgcacgactacttaggtagtttgcaacct
agtccaaaaccaatcgttcaacggtacaagggattgggtgaaatggatgctgaccagttg
tgggatacaacaatgaatcctgaaaatagacgtcttgatcgtgttagcccagaatatgcc
aaaaacgttgatgaagtttttgaacttttgatgggtaatgaagttgcaccaagacgaagc
tttattgaaaataatgctaaatatgttgagaatttggatgcttag
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