Lactobacillus apis: DKL56_02585
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Entry
DKL56_02585 CDS
T06844
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lapi
Lactobacillus apis
Pathway
lapi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lapi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKL56_02585 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lapi03019
]
DKL56_02585 (rny)
Messenger RNA biogenesis [BR:
lapi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DKL56_02585 (rny)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AWM73451
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Position
516413..518044
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AA seq
543 aa
AA seq
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MTNTILIPVAVAIISILVGTVIGYAVRKNVWEKKVQNAQSDADHILTEAKAQVDAAKAEV
NAQKQAADAIKQSAQNTKKEKILEAQEQIQEYRQKVEDELNTKRDAIARDDNRLKQREDT
LNHKNSLLIEKEDGLTEKENQLVKQKADLDEKIKKADELVQQSQDKLYEVAHLDKEQGKK
MVLSQLSDELVKERAEMIQNSNEEVKAKADHYAHKIIIDAIQNSSADTVAETTVSVVDLP
NEEMKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDAIRREIAKRAMERLIKDG
RIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHKMNPELVKTLGRLKYRTSYGQNVL
GHSIEVAKLAGTMAAELGLNEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKYHEPD
VVVNAIAAHHGDVPKTSFIAELVVAADTISSARPGARSESLENYIRRLTELEQIANRYDG
VKQAYAIQAGREVRVMVEPDKISDDRITVLARDIRNQVEKELDYPGNIKITVIREKRVVA
VAK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatacaatattgattcccgtcgcggttgctattatttcaattttagttggtaca
gtcattggctacgccgttcgaaagaacgtttgggagaaaaaagtccaaaatgcgcaaagt
gatgctgaccatattttaaccgaagcaaaagcacaagtagatgctgcaaaagctgaagtc
aacgcacaaaagcaggcagcagatgctattaagcaaagtgcacaaaataccaaaaaagag
aaaattcttgaagctcaagaacagattcaagaatatcgacaaaaagttgaagatgagcta
aacacaaagcgtgacgcaattgcacgtgatgataatcgcttaaaacaacgagaagataca
ctcaatcacaagaattctttgttgatcgaaaaagaggatggactgaccgaaaaggaaaac
caattagtaaaacaaaaagctgatttagatgaaaaaattaaaaaagctgatgagttagta
cagcaaagccaagataagctctatgaagtagctcatttggataaagaacagggtaaaaag
atggttcttagtcaactatctgatgagctagttaaagaacgtgctgaaatgattcaaaat
agtaatgaggaagttaaggcaaaagctgatcactatgctcataaaatcattattgatgcc
attcagaatagttcagctgatactgtggctgagactacagtatcagttgttgatttacct
aatgaagaaatgaagggacgaattattggtcgtgaaggtagaaatattcgttcttttgaa
gcccttactggtgtcgatttaatcattgatgatactccaaaagtggttacactaagtggt
tttgacgcaattagacgtgaaattgcaaaacgagcaatggaacgcttaattaaggatgga
cggattcatcctgctagaatcgaagaaatggttgataaggctcgtaaagaggtcaacgac
gatatttatgaagctggtgaaagcgccctaatggaattaggaattcacaaaatgaatcct
gaattggttaaaacattaggtcgactcaagtatcggacatcatatggacaaaatgtttta
ggtcactcgattgaagtggcaaaattagccggcacaatggcggctgagctaggtttaaat
gaaaaattagcggttcgcgcgggattattacacgatataggaaaagccatcgatcatgat
attgaaggctcacacgttgaaataggtgtggaattaacaagaaaatatcatgagccagat
gtagtagttaatgcaattgctgctcatcacggggatgtaccgaagacttcgtttattgct
gaactagtagtagcagcagacacgatttcttctgcaagaccaggagcaagaagtgaaagt
ttagaaaactatattagacggttaactgaactagaacaaattgccaatcggtatgacgga
gttaaacaggcttatgccattcaagcaggacgtgaagttcgcgtaatggtagagccagac
aagatctcagatgatcgcatcactgttttagcacgtgatattcgaaaccaagttgaaaaa
gagcttgattacccgggtaatattaagattacggtcattcgtgaaaaaagggtagttgca
gttgcaaaataa
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