Lactobacillus apis: DKL56_03470
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Entry
DKL56_03470 CDS
T06844
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lapi
Lactobacillus apis
Pathway
lapi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lapi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DKL56_03470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lapi03400
]
DKL56_03470
Enzymes [BR:
lapi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DKL56_03470
DNA repair and recombination proteins [BR:
lapi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DKL56_03470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD_C
WHD_MCM4
AAA_22
RsgA_GTPase
UvrD-helicase
nSTAND3
AAA_12
Herpes_Helicase
AAA_28
AAA
NTPase_1
AAA_29
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AWM73613
LinkDB
All DBs
Position
711259..713622
Genome browser
AA seq
787 aa
AA seq
DB search
MTKFVGKVNRIVFENDQDLYKILDVTIIGKLEDYDREEIKVTGSFGEIQENTTYSFEGKL
VVHNKFGLQFRCDSYKQSVPHEKGSLTRYLSSNKFPGIGKKAADSIISVLGVDALSVLKE
KPEKVSVLPLTKKQKDSLLNGVQSMDSYSEIVLKLAQFGLNKKVAGRLYQLYHGDTLTKI
ENDPYAAISEVTGYAFKSSDQIGNKLGIEVDDPRRIKGAVFQVLMDELSQAGNTYIKLEQ
LLTSASELLQFKHFDPIANAVNELQHEGKVVVSGENAALQNIYATENDIALMMKNLVDRK
DESEHFEDKAIDKAIKNAEKKLKIKYDQTQKLAIKNALTNPISILTGGPGTGKTTIINGI
LLALRELADIPASALYSSDPPFLLAAPTGRAAKRMEEITGITAKTIHRMLGLGIGDSDAL
DLNELNGEILIIDEMSMVDMFLFKELVSCIAETRHVVFVGDKDQLPSVGAGNVFSDLISA
DVFPTTVLKQIHRQGDDSSIITLAHDINEGQDQDALFNKTKNYSFISCPPHEVDHVVSQI
VERALKRGFDQDDIQVLGAMYQGSGGVTNLNNVIQEIMNPAKPNSKILEAHDEIFRIGDR
VLQLQNNPEKDIYNGQIGKIISIDEKNPQKCMTADFDGREINFSKKDLFDLTRAYAITIH
KAQGSEFPLVILSLTMQNYVMLKRNLLYTAVTRAEKNLVLIGDPRAYAMAFNTPGNDRKT
GLSAKLCEQLGKKVNTEVVDEKEDSNLASSTTDLPKDEDYVLTSELIYSGQIDPMIGMQG
IKLGVQQ
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgactaagtttgttggaaaagtgaacagaatcgttttcgaaaacgatcaagatttatat
aaaatccttgatgtaacaatcattggcaaattggaagactatgatcgcgaggaaattaaa
gtaactggtagttttggcgaaattcaagaaaatactacttatagctttgaagggaagctc
gttgttcacaataagtttggtttacaatttcgatgcgatagctataagcaatcagtccca
cacgaaaagggtagtttaacgcgctatttgagttcaaataaattccccggaattggtaaa
aaggcagcagactctattatttcggttttaggtgttgatgcattatcagttttaaaagaa
aaacctgaaaaagtttctgttttaccgttaactaagaagcaaaaggatagtctattaaat
ggagttcagtcaatggattcatattcagagattgttcttaagcttgcccaatttggatta
aataaaaaggttgctggccggctttaccaactatatcatggcgatactttaactaaaata
gaaaatgacccctatgctgcaatttcagaagtgacaggttatgcttttaaaagttcggat
caaataggaaataagttggggatagaggttgatgatccccgcagaattaagggtgcagtt
tttcaggttctaatggatgagcttagccaagctggaaatacctatatcaagttagaacag
cttctaacgtcagctagcgaattattgcaatttaagcattttgatccaattgccaatgca
gtcaatgaattgcagcatgaaggcaaagttgtggtttctggtgagaatgctgcactacaa
aacatttatgcaacagaaaacgacattgctttaatgatgaaaaacttagttgatcgtaaa
gatgaaagtgagcattttgaagataaggcaatcgacaaagcaataaaaaatgctgagaaa
aagctaaaaattaaatatgaccaaacgcaaaagcttgcaataaaaaatgctctaactaat
ccaatatcgattttaacgggtggacccggaacaggtaaaacaactatcattaatggtatc
ttgttagctttacgtgaacttgctgatattcctgcatcagcactttatagtagtgatccg
ccattcttactggcagctccaactggccgagcagcaaagcgcatggaagaaataactggt
attacggcaaaaacaattcaccgcatgctaggcttaggaattggcgatagtgatgctctt
gatctcaacgaacttaatggcgaaattctaatcattgatgaaatgtcgatggttgatatg
ttcctttttaaagaactagtttcttgcatagctgaaacacgacacgttgtatttgttgga
gacaaggatcagctgccatcagttggtgcaggaaatgtttttagtgacttaattagtgca
gatgtttttccaacaactgttctaaaacaaattcaccgtcagggtgacgattcaagtatt
attacgcttgcccacgatataaatgagggacaggatcaagacgcattatttaataaaact
aagaactattctttcatttcctgtccgccacatgaagttgatcacgtagttagtcaaatt
gttgagcgtgctcttaaacgtggttttgatcaggatgatattcaagtattgggtgcaatg
tatcaaggttctggtggcgtaactaatctaaataatgtgattcaggaaattatgaatcca
gccaaacctaatagtaaaattctcgaagctcatgatgaaatttttcgaattggcgacagg
gtgctacaactgcaaaataaccctgaaaaagatatttacaatggacaaataggaaaaata
atctccatcgatgaaaaaaatccgcaaaagtgtatgacagctgattttgatggacgtgaa
attaactttagtaagaaagatctgtttgaccttactagagcttatgcgattacgattcac
aaagcacaaggttctgaatttcccttggttattttaagcttgaccatgcaaaactatgtc
atgttgaaacgaaatcttttatatacagccgttacccgagcggagaaaaatcttgtgtta
attggagacccgcgtgcatacgcaatggcttttaatacaccaggaaatgaccgtaaaact
ggcttaagtgccaaactgtgtgaacagctaggtaagaaagttaatacagaagtggttgat
gaaaaagaagatagtaatcttgcaagtagcaccactgacttgccaaaagatgaagattac
gttttaacttcagaattaatttattcaggtcaaatagatccaatgattggcatgcaagga
attaaattaggtgttcaacaataa
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