Lactobacillus apis: DKL56_03570
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Entry
DKL56_03570 CDS
T06844
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lapi
Lactobacillus apis
Pathway
lapi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lapi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKL56_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lapi03019
]
DKL56_03570
Messenger RNA biogenesis [BR:
lapi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DKL56_03570
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
AWM73631
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Position
730693..732477
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AA seq
594 aa
AA seq
DB search
MADQVKIMILSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLYGIDLVIPDLDFFEKYG
DQVVGIFLTHGHADSIGALPYILRQYDIPVFGSRLTIELAKITVKRENKRIKNSLFHVID
AETEIEFKNANISFFHTTHSIPDSLGIDVHTPAGEVVYTGDFKFDPSAAPKYRTDLDRLA
EISQKKVLALLSDSSNAEASLPNVSEQEIGEYVTNVFRNATGRVIVAAKASNLIRIQEVL
NAAHETGRKVLLTGRDVAKIVRTAMDLGYLYVPKNLLMRVKDLSTTPDNKVVILETGQMG
EPLNSLQKMAKKRHSMITIHENDLVFIATTPSHSVETVVAQTSDLVYRAGGTVIELGRAK
HTSGHATGRDLQMLIDILKPQFVIPVIGEYRLLEVHRDLAIRAGIKKENVLITRNGDCLD
YDFKQKKFNLTDPVPGEDIMIDGSGIGDVGNIVLRDREILSDDGIFIAVVTIDRRKKKII
AQPQVTSRGFVYIKANHQLMNDCIELIKKTINNNFEHKKFDWTEIKQDVRNDLEKFLYKK
TNRRPVVLPVVMEVNQNRHRAMQKRSSKDAATGKNNEHHSVDVKKSGKKIVKKD
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcaagttaagataatgattttgagcggtgttcgtgaacaaggaaaggacatg
tttgctgttcaagttaatgatgaaatttttgttcttgatgctggattgaaataccctgat
agttctttatatggaattgatttggttattccagatctcgacttctttgaaaaatatggt
gaccaagttgttggtatttttctaactcatggacacgctgattcaattggggccttgcca
tatattttgcgtcaatatgatatacctgtatttggttctcggttaacgattgaactggct
aaaattacagttaaaagagagaataagcgaattaaaaacagtttgttccatgtaatagac
gctgaaactgaaattgaatttaaaaacgcgaatatttcattcttccacacgactcactca
attcctgactcgctcggaattgatgtgcacactccagctggagaagtagtttatactggt
gactttaagtttgatccttctgcagcgccaaaatatcgaactgatttagatcggttggca
gaaatttcacagaagaaagttttggcacttttaagtgattcttctaatgcagaagcatca
ctacctaacgtttctgaacaagaaataggtgaatatgtgaccaatgtttttcgtaatgcc
actggtcgagtaattgtagccgctaaagcttctaatttaatcagaattcaagaagtttta
aatgctgcgcatgaaacaggccggaaggtactattaactggacgtgatgtagcaaaaata
gttcgtacagcaatggacttaggttatctttatgttcctaaaaatctgttaatgcgtgtc
aaagatttgagcactacaccagataacaaagtggtaattcttgaaactgggcaaatgggt
gagccattaaattctttgcaaaaaatggctaaaaaacgtcacagtatgattacgattcat
gaaaatgacctagttttcatcgcaacaacaccatctcattctgttgaaacagtagttgcg
cagactagtgatcttgtttatcgagcaggcggaaccgtaattgagcttggtagggctaag
cacacaagcggtcatgcaactggacgcgacttgcaaatgctaattgatattctaaaacca
caatttgttattccggtaatcggtgaatatcgcttattggaagttcatcgcgaccttgca
ataagagcaggaattaagaaagaaaatgttttgattaccagaaatggtgattgcttggac
tacgattttaaacaaaagaagtttaatttaactgatcctgttccaggcgaagatataatg
attgatggttcaggcatcggtgatgtcggcaatattgtcttgcgtgaccgagaaattttg
tcagatgatggaatttttattgccgttgttacaattgatcgtcgtaagaaaaagattatt
gcccaaccacaagttactagtcgtggcttcgtttacatcaaggccaatcatcaattgatg
aatgattgtattgaattaattaaaaagactataaataataactttgaacataagaagttt
gattggactgaaataaagcaggatgttagaaacgatttagagaagttcttatataagaaa
actaatcgtcgtcctgtagtgttaccagtggtcatggaagtaaaccagaatagacatcgt
gcgatgcaaaagcgttcgagcaaggatgcggctactggaaaaaataatgagcatcattcc
gttgacgtgaaaaaatctggtaagaaaatagttaagaaagactag
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