Lysobacter antibioticus ATCC 29479: GLA29479_1296
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Entry
GLA29479_1296 CDS
T04526
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GLA29479_1296 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_1296 (recC)
Enzymes [BR:
laq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GLA29479_1296 (recC)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GLA29479_1296 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ALN62180
LinkDB
All DBs
Position
complement(1387384..1390764)
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AA seq
1126 aa
AA seq
DB search
MPARADFRLYHSNALDVLAGLLAQELRTPAPGQPLLAPDVILIPQVAMRRWLQATLAQAY
GIAANLEFLTPGEFVQRALDANATEQDRDHPGEDLDAQALRWRLYEVLSQPGQMREPALA
PLRAYLDGDDPLKSWSLSGELASLFEKYQAWRRDWLLAWDAGHERNDPQAALWRRVAAGR
RYRARRIDDYLTRFQGEAGIAHPPRGLPPRLFAFATLNVSPDVLRMIATQSIAGTLHFYL
PTPTRKYWGDLGTLAERLRLGEDAAFGDDENPLLQAWGAAGRDFMAVLGGYEVVHPSGEI
AAYADPEESRHDDPARDSLLQRLQRDLLHRRALPATPWRERVDRGDASLQVHACHTRLRE
VQVLHDQLQGLLDPNSAEGRRFDPPLQPREIAVLAPDIDPYAPHIAAVFGGLAGRPGFIP
YALADASPLASEPLAEVFLRLLALPVSRFGLSEILDLLATPAIADQAGLDGAGLERLRTW
LQNAGARWGIDAAHRSRHDAPGDDAYTWAFALDRLLLGHAAGDGAAPDEMIAGIAPYAEL
EGASLDALDALIRLLRVLARFERALDAELSPAHWADRLLGLLRAMLPERPRDATDQRTLE
RLRNLIESFARDAAKAGFEGSVGAEVVRSHFRAALAEADTRAPLLTGGVSFGRMVPMRLI
PFRVICLLGMNDGDYPRRDPAGGLNRLAAELGTAARRHGDRSLRDDDRFLFLQLFGAASD
SFYLSYLGADPRDGSQREPSTLVSELLDVAARYHADPAAARSEFVVREPLQPFAAAAFGA
GEREPEPRRFSYRAEWRPAVDAGALGLRGEIGPWLNEPLPPDPDAADDGSVTYQDLRSFL
RDPPTAFLRQRLGLRLPDEIDSSDDVEPLVLPGPGLFRQQLQRAVFDDLIAGGGRIDRER
LQATLRARALLPSGPLGRRQLDALLGQVRPYADAFAGWRSGEAEALPFELDLGDARLLGR
LDDVYAGGLARLRFDSLHGPSQIAHGLDWLVLSALGDRRPLAQFAQVDGGPGPHLREALA
PQQAQAALRTLLRLRDYGLRAPLPFLPRAGWLWYEAAAQDKDGWGKAESQWHGSPRSWGE
ATTPGARLALRGRDPFRDPMLGEEFREIAKLVFGAVVHGRDEGGDA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcgtgccgatttccgtctttatcattccaatgcgctggacgtgctggcgggt
ctgctcgcgcaggagttgcgcacgcccgcgccggggcagcccttgcttgcgcccgatgtg
atcctgatcccgcaagtggcgatgcgccgttggctgcaggcgacgctggcccaggcctac
ggcatcgccgccaatctggaattcctgaccccgggcgaattcgtccagcgcgcgctcgac
gccaacgcgaccgagcaggaccgcgatcaccccggcgaggacctcgatgctcaggccctg
cgttggcgcttgtacgaggtgttgtcgcagccggggcaaatgcgcgagccggcgctggcg
ccgctgcgcgcctatctcgacggcgacgacccgctgaagtcgtggtcgctgtcgggcgag
ttggcctcgctgttcgagaagtaccaggcctggcgccgcgactggctgctggcctgggac
gccggccacgaacgcaacgatccgcaggccgcgctgtggcgccgggtcgccgccggccgc
cgctaccgcgcgcgccgcatcgacgattacctgacccgcttccagggcgaggccggcatc
gcgcatccgccgcgcggactgccgccgcgcttgttcgccttcgccaccctcaacgtctcg
cccgacgtgctgcggatgatcgcgacccagtcgatcgccggcaccctgcatttctatctg
ccgaccccgacgcgcaagtactggggcgacctgggcactctggccgaacgcctgcgcctg
ggcgaggacgccgccttcggcgacgacgagaacccgttgctgcaggcctggggcgcggcc
ggccgcgatttcatggcggtgctcggcggttacgaggtcgtgcacccctccggcgaaatc
gccgcctacgccgatcccgaagagagccgtcacgacgatcccgcgcgcgacagcctgctg
cagcgcctgcaacgcgacctgctgcatcggcgcgcgctgccggcgacgccgtggcgcgag
cgcgtcgatcgcggcgacgccagcctgcaggtgcacgcctgccacacccgtctgcgcgaa
gtgcaggtgctgcacgatcagttgcagggcctgctcgatccgaactcggccgagggccgg
cgcttcgatccgccgttgcagccgcgcgagatcgcggtgctggcgcccgacatcgatccc
tacgcgccgcacatcgccgcggtgttcggcggcctggccgggcgcccgggtttcattccg
tatgcgctggccgatgccagcccgctcgcgtccgagccgctcgcggaagtgttcctgcgc
ctgctggccttgccggtctcgcgcttcggcctcagcgaaatcctcgacctgctggcgacg
ccggcgatcgccgatcaagccggcctcgacggcgccggcctcgaacgcctgcgcacctgg
ctgcagaacgccggcgcgcgctggggcatcgacgccgcccatcgcagccgccatgacgcc
cccggcgacgacgcctacacctgggcgttcgcgctcgaccgcctgctgctcggccacgcc
gccggcgacggcgccgcgcccgacgagatgatcgccggcatcgcgccctatgccgagctc
gaaggcgcctcgctggacgcgctggatgcgctgatccgtctgctgcgggtgttggcgcgc
ttcgaacgggcgctcgatgccgaactgagcccggcgcactgggccgaccgcctgctcggc
ctgttgcgggcgatgctgcccgaacgcccgcgcgatgccaccgaccaacgcaccctcgaa
cgcctgcgcaacctgatcgaaagcttcgcccgcgatgccgccaaggccggcttcgaaggc
agcgtcggggcggaagtggtgcgcagccatttccgcgccgcgctcgccgaggccgacacc
cgcgcaccgctgctgaccggcggcgtcagcttcggccgcatggtgccgatgcgtttgatt
ccgttccgggtgatctgcttgctcggcatgaacgacggcgattacccgcgccgcgacccg
gccggcggcctcaaccggctcgccgcggaactcggcaccgccgcgcgccgccacggcgac
cgctcgctgcgcgacgacgaccgcttcttgttcctgcagttgttcggcgccgcctccgac
agcttctacctgagttacctcggcgccgatccgcgcgacggcagccagcgcgaaccctcg
accctggtctcggaactgctcgacgtggccgcgcgttaccacgccgatccggccgcggcg
cgcagcgagttcgtggtgcgcgaacccctgcagccgttcgccgcggccgcgttcggcgcc
ggcgagcgcgagccggagccgcgccgtttcagttaccgcgccgaatggcggccggcggtc
gacgccggtgcgctcggcctgcgcggcgagatcggcccctggctcaacgagcccttgccg
ccggatcccgacgccgccgacgacggcagcgtgacctatcaagacctgcgcagcttcctg
cgcgacccgccgaccgcgttcctgcgccagcgcctcggtctgcgcctgcccgacgagatc
gacagcagcgacgacgtcgagccgctggtgctgcccggcccgggcctgttccgccagcaa
ctgcagcgcgcggtgttcgacgacctgatcgccggcggcggccgcatcgaccgcgagcgc
ctgcaggcgacgttgcgcgcgcgcgcgctgttgccgtccggcccgctcggccggcgccag
ctcgatgctctgctcggtcaggtgcggccctatgccgacgccttcgccggctggcgcagc
ggcgaggccgaagcgttgccgttcgaactcgacctcggcgacgcgcgcctgctcggccgg
ctcgacgacgtctacgccggcggcctcgcgcggctgcgtttcgacagcctgcacgggccg
tcgcagatcgcccacggtctcgactggctggtgctgtcggcgctcggcgaccggcgcccg
ctggcccagttcgcccaggtcgacggcggcccggggccgcatctgcgcgaagcgctggcg
ccgcagcaggcccaggctgcgctacgtactttgttgcgcctgcgcgactacggcttgcgc
gcgccgctgcccttcctgccgcgcgccggctggctctggtacgaagccgccgctcaggac
aaggacggctggggcaaggccgagagccaatggcacggcagcccgcgcagttggggcgaa
gcgaccacgcccggcgcgcgcctggccttgcgcgggcgcgatccgttccgcgacccgatg
ctcggcgaagaattccgcgagatcgccaagctggtgttcggcgccgtcgtccacggccgc
gacgaaggcggcgacgcatga
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