Lysobacter antibioticus ATCC 29479: GLA29479_1398
Help
Entry
GLA29479_1398 CDS
T04526
Name
(GenBank) helicase domain protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laq03019
]
GLA29479_1398
Enzymes [BR:
laq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLA29479_1398
Messenger RNA biogenesis [BR:
laq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GLA29479_1398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALN62282
LinkDB
All DBs
Position
1486870..1488084
Genome browser
AA seq
404 aa
AA seq
DB search
MNAAEFPIDSLLPSIRDSLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLRGQRIVMLEPR
RVAARAAAQFMARQRGEAAGDTVGYRIRFENKVSARTRIEVVTEGILTRMIQDDPSLEGV
GALVFDEFHERHLAADLGLALALDVQASLREDLRIVVMSATLDGERLAQFLDAPRLSSAG
RSYPVTLAHYPARREEKLEHQLRRAVEHALQQHPGDVLVFLPGQREIARADAALAGSDAL
RGVDVLSLHGELPVEQQSRVLQPDPDGRRRVVLATNVAESSVTLPGVRVVIDAGLAREPR
YDPNSGFSRLDVVAIAQASADQRAGRAGRVAEGWAYRLWPESQRLEPQRRPEIVQVELAG
LALELAAWGDAGLRFVDPPPGGAMGAARELLLRLGALEAGXXHT
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgccgccgaattcccgatcgattccctgctgccgtcgatccgcgacagcctcgcc
gcacatccgcgcctggtcctggaagcgccgcccggcgcgggcaagaccacccaagtgccg
ccggccctgctcgatgcgccgtggctgcggggccagcgcatcgtcatgctggaaccgcgc
cgcgtcgccgcgcgcgctgccgcgcaattcatggcgcggcagcgcggcgaagccgccggc
gacaccgtcggctaccggatccgcttcgagaacaaagtctccgcgcgcacccgcatcgag
gtggtcaccgaaggcatcctgacccggatgatccaggacgacccgagcctggaaggggtc
ggcgcgctggtgttcgacgaattccacgagcgccatctcgccgccgacctcggcctggcg
ctggcgctcgatgtgcaggcctcgctgcgcgaggacctgcgcatcgtggtgatgtcggcg
accctcgacggcgagcgcctggcccagtttctcgatgcgccgcgcctgagcagcgccggg
cgcagctatccggtgacgcttgcgcactatccggcacggcgcgaggaaaaactcgagcac
caactgcggcgcgcggtcgagcatgccttgcagcagcatcccggcgacgtgctggtgttc
ctgcccgggcagcgcgagatcgcgcgcgccgatgccgccctggccggcagcgatgcgctg
cgcggcgtcgacgtgctgagcctgcacggcgagttgccggtcgagcagcaaagccgggtc
ttgcaacccgaccccgacggtcgccgccgggtcgtgctggcgaccaacgtcgccgagtcc
agcgtcaccctgcccggggtgcgcgtggtgatcgacgccggcctcgcccgcgagccgcgc
tacgaccccaacagcggtttctctcgcctcgacgtggtcgcgatcgcccaggcctcggcc
gatcagcgcgccggccgtgccggccgcgtcgccgaaggttgggcgtatcgcttatggccg
gaatcgcaacgtctggaaccgcagcggcgccccgagatcgtccaggtcgagttggcgggg
ctggcgctggaactcgccgcctggggcgacgccggcctgcgcttcgtcgatccgccgccg
ggcggggcgatgggcgcggcgcgcgaactgctgctgcggctaggcgcgctcgaagccggn
nnnncacacacttaa
DBGET
integrated database retrieval system
