Lysobacter antibioticus ATCC 29479: GLA29479_265
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Entry
GLA29479_265 CDS
T04526
Name
(GenBank) ATP-dependent helicase C-terminal family protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laq03019
]
GLA29479_265
Enzymes [BR:
laq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLA29479_265
Messenger RNA biogenesis [BR:
laq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GLA29479_265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Motif
Other DBs
NCBI-ProteinID:
ALN61151
LinkDB
All DBs
Position
284159..285370
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AA seq
403 aa
AA seq
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MCXXDPLRSGGDALAARWQALAAFRQGRAPAEASRSALAALDQAAKQWRRRLRVDATPPT
QVPAHALGDLLLHAFPDRIARQHPSDPYRYQLANGRSAKLFDDSAVYGEPWLVISELRDD
PRDARVLRASPLDEARLEREFPQRFVSEDRVVWDAAARAIAAVRERRYDRIVLDSRPLAK
PDPSRYADALVDAVRQLGLDALPWTGGLRQWRARVRCLREWMPELAQGDNALPELSDEVL
LAGLDDWLKPALRGKTRLDALDEGAFGEALRSLSDWSWRQRLDALAPTRMVVPSGMERAI
DYAYDEHAADGRGAAVAPVLAVKLQELFGLADTPRIAEGRVPLTLHLLSPAGRPLQVTQD
LRGFWERTYPEVKKEMKGRYPKHPWPDDPWTATATHRAKPRGT
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgnnnnngacccgctgcgcagcggcggcgacgcgctggccgcacgctggcaggcg
ctggccgcgttccgccagggccgcgcaccggccgaggcctcgcgttcggccttggccgcg
ctcgaccaggccgccaagcaatggcgccggcgcttgcgcgtcgatgcgacaccgccgacc
caggtgcccgcacacgcgctcggcgacctgctgctgcatgcgtttccagaccgcatcgcc
cgccagcacccgagcgacccctaccgctatcagctcgccaacggccgcagcgccaagttg
ttcgacgacagtgcggtctacggcgagccttggctggtgatcagcgaactgcgcgacgac
ccgcgcgatgcgcgcgttctgcgcgcctcgccgctcgacgaggcgcgcctggagcgcgag
ttcccgcaacgtttcgtcagcgaggaccgggtggtctgggacgccgccgcgcgcgcgatc
gcggcggtgcgcgagcgccgctacgaccgcatcgtgctcgacagccgcccgctcgccaaa
cccgatccctcgcgttatgccgatgccctggtcgacgcggtgcgccagctcggcctcgac
gcgctgccctggaccggcggcctgcgccagtggcgcgcgcgcgtgcgctgcctgcgcgaa
tggatgcccgagttggcccagggcgacaacgccttgccggagctgtccgacgaggtcttg
ctggccggcctcgacgactggctgaagccggcgctgcgcggcaagacccgcctcgatgcg
ctcgacgagggcgcattcggcgaagccctgcgctcgctctcggactggtcgtggcggcag
cggctcgacgcgctcgcgcccacccgcatggtggtgccgtcggggatggagcgcgccatc
gactacgcctacgacgagcatgccgccgacggccgcggcgccgctgtcgcgccggtgctg
gcggtgaaactgcaagagctgttcggcctggccgatacgccgcgcatcgccgaaggccgc
gtgccgttgaccctgcacctgctgtcgccggccgggcggccgttgcaggtcacccaggac
ctgcgcggtttctgggagcgcacctaccccgaggtcaaaaaggaaatgaaggggcgctat
cccaagcatccctggcccgacgacccgtggacggcgaccgcgacccaccgggccaagccg
cgcggcacctga
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