Lysobacter antibioticus ATCC 29479: GLA29479_331
Help
Entry
GLA29479_331 CDS
T04526
Name
(GenBank) ATP dependent DNA ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GLA29479_331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_331
Enzymes [BR:
laq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GLA29479_331
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GLA29479_331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALN61216
LinkDB
All DBs
Position
347936..348988
Genome browser
AA seq
350 aa
AA seq
DB search
MAPAIIDISGRIEPVAEIARSKIDWAGLASLLLGAKPAEWPAEAFEPQRAVAGPSPPNDG
KWLHELEWHGQRTLAVIADGRARLWSGDGAEWTARVPGIVEALERLGLQSAAFDGELIVG
AGAEADYAALQAVLSGDRCDPLTYMLFDLLHIDGIAIERAPLVDRKAVLEHLLRQAPREL
AYSSHILGNGDIARAVTVNQCFDGLISKRAFASYMRGCSPDWRKTRLLQSSQFAVVGYTP
PGLRHADRGFGSLLLAQPKGKAAWHYAGQARGDFDSVLIAELGSRLKGGTIKPTVTVNPD
VREIPGALWFKPRFVVEIDSHGFDASGLLRHGLLRLVCPNRSVASLRSGK
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgcgatcatcgatatttccggccggatcgaaccggtcgcggagatcgcgcgc
agcaagatcgactgggccggcttggccagtctgttgctcggtgcgaagccggccgagtgg
cccgccgaagccttcgagccgcaacgggccgtggccgggccgtcgccgccgaacgacggc
aagtggttgcacgaactggaatggcacggccagcgcacgctcgcggtgatcgccgatggc
cgcgcgcgcctgtggtcgggcgatggcgcggaatggaccgcgcgcgttccgggtatcgtc
gaggcgctggagcggctggggctgcaatcggcggccttcgacggcgagctgatcgtcggc
gccggcgccgaagccgattacgccgcgctgcaggcggtgttgtcgggagaccgctgcgac
cccttgacctatatgttgttcgatctgttgcatatcgacggcatcgccatcgagcgtgcg
cccctggtcgatcgcaaggccgtgctcgagcatctgctgcgacaggcgccgcgggaactg
gcctatagcagccatatcctcggcaacggcgacatcgcccgcgcggtgaccgtcaaccaa
tgcttcgacgggctgatttccaaacgcgctttcgcatcctacatgcgcggatgcagcccg
gactggcgcaagacgcgcttgcttcagtccagccagttcgccgtggtcggctacaccccg
cccggcctgcgccatgcggaccggggcttcggatcgttgttgctcgcgcaacccaaaggc
aaggcggcctggcattacgccggccaggcgcgcggcgatttcgacagcgtgctgatcgcg
gagctcgggtcgcggctgaaaggcgggacgatcaaaccgacggtcacggtgaatcccgac
gtccgggaaatacccggcgcgctgtggttcaagccgcgcttcgtggtcgagatcgacagc
catggcttcgatgcctcgggcctgctgcggcatggcctgttgcgcctggtctgcccgaac
cgatcggtggcgagcctcaggtcgggcaaatag
DBGET
integrated database retrieval system
