Lysobacter antibioticus ATCC 29479: GLA29479_4054
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Entry
GLA29479_4054 CDS
T04526
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03420
Nucleotide excision repair
laq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLA29479_4054 (uvrD)
03430 Mismatch repair
GLA29479_4054 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_4054 (uvrD)
Enzymes [BR:
laq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLA29479_4054 (uvrD)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GLA29479_4054 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
GLA29479_4054 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ALN64900
LinkDB
All DBs
Position
complement(4419423..4421588)
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AA seq
721 aa
AA seq
DB search
MLDALNPAQREAVSAPPGHYLVLAGAGSGKTRVLTHRIAWINEVFGVPTHGILAVTFTNK
AAGEMRGRVDAQLRHGARGMWIGTFHGLAHRLLRLHWQEAKLPEGFQVLDSDDQLRLVKR
VVQALELDETRFPPRQIVWWINAQKDEGRRPRNIQPAGDEWADVMLRCYEAYQERCERAG
LVDFAELLLRAHELLRDNAALLAHYRNRFREILVDEFQDTNAIQYAFVRVLAGDSGRVFV
VGDDDQAIYGWRGAKVENVQRFLRDFPGASTIRLEQNYRSSANILDAANAVIAHNPDRLG
KKLWTDTGHGEAIDLYAAYNEMDEARFVVERLRQWVRDGGSYGDVAVLYRSNAQSRAYEE
ALLSEQVPYRVYGGQRFFERAEIKDTLAYLRMIANRADDAAFERAVNTPTRGIGERTLDE
VRKRARADAVSLWEAARRISQENGLAARARNALAGFALLIDTLESDVVEMPLPEKIDHIL
QRSGLREHYANESRGQLDSRTDNLDELVSVASRFTRTDEDEAAAMPELIAFLSYAALEAG
EGQAQAGEDGVQLMTLHSAKGLEFPLVFLGGLEEGLFPSGRSTEESGRLEEERRLAYVGI
TRAREKLVLSYAETRRIHGMDMFGVPSRFLREIPPALLNEVRPKVQVSRPVYGAGPRRAD
YGHAAIEAPPVKLGSQVRHASFGTGTVTDYEGTGAHARVQVNFDDAGSKWLVLAYANLQP
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcactcaatcccgcccagcgcgaagccgtttcggcacctcccggtcattac
ctcgtgctcgccggcgccggcagcggcaagacccgcgtgctgactcaccgtatcgcctgg
atcaacgaagtcttcggcgtgccgacccacggcatcctcgcggtgaccttcaccaacaag
gccgccggcgaaatgcgcggccgcgtcgacgcgcagctgcgccacggcgcgcgcggcatg
tggatcggcaccttccacggcctggcccaccgcctgctgcgcctgcactggcaggaggcc
aagctgccggaaggcttccaggtgctcgacagcgacgaccagctgcgcctggtcaagcgc
gtggtgcaggcgctggagctcgacgagacccgcttcccgccgcgccagatcgtgtggtgg
atcaacgcccagaaggacgaaggccggcggccgcgcaacatccagccggccggcgacgaa
tgggccgacgtgatgctgcgctgctacgaggcctaccaagagcgctgcgaacgcgccggt
ctggtcgacttcgccgaactgctgctgcgcgcgcacgagctgctgcgcgacaacgccgca
ctgctcgcgcattaccgcaaccgcttccgcgagattctggtcgacgagttccaggacacc
aacgcgatccagtacgccttcgtgcgcgtgctcgccggcgactccggccgcgtgttcgtg
gtcggcgacgacgaccaggccatctacggctggcgcggcgccaaggtcgagaacgtgcag
cgcttcctgcgcgatttccccggcgccagcaccatccgcctggagcagaactaccgctcc
agcgccaacatcctcgacgccgccaatgcggtcatcgcccacaaccccgaccgcctcggc
aagaagctgtggaccgacaccggccacggcgaagcgatcgacctgtacgccgcctacaac
gagatggacgaggcgcgcttcgtggtcgagcgcctgcgccagtgggtgcgcgacggcggc
agctacggcgacgtcgccgtgctctaccgcagcaacgcgcaatcgcgcgcctacgaagag
gccctgctgtcggaacaggtgccgtaccgggtctacggcggccagcgcttcttcgagcgc
gccgaaatcaaggacaccctggcctatctgcgcatgatcgccaaccgcgccgacgacgcc
gccttcgagcgcgcggtcaacacgcccacccgcggcatcggcgagcgcaccctcgacgag
gtgcgcaagcgcgcccgcgccgatgcggtctcgctgtgggaggcggcgcggcggatctcg
caggagaacgggctcgccgcgcgcgcccgcaacgccctggccgggttcgccctgctgatc
gacacgctggaaagcgacgtagtcgagatgccgctgccggagaagatcgatcacatcctg
cagcgttcgggcctgcgcgagcactacgccaacgaatcgcgcggccaactcgattcgcgc
accgacaacctcgacgaactggtctcggtggcctcgcgtttcacccgcaccgacgaggac
gaggccgcggcgatgccggagctgatcgccttcctcagctacgccgcgctcgaggccggc
gaaggccaggcccaggccggcgaggacggcgtgcagctgatgaccttgcacagcgccaag
ggactggagtttccgttggtgttcctcggcggcctggaagagggcctgttcccgagcggg
cgttcgaccgaggagtccgggcgcctggaggaagagcgccgcctggcctatgtcggcatc
acccgtgcgcgcgagaagctggtgctcagctatgccgagacccgccgcatccatggcatg
gacatgttcggggtgccctcgcgcttcctgcgcgagattccgccggccctgctcaacgaa
gtgcggccgaaggtgcaggtgtcgcgtccggtttacggcgccggcccgcgccgcgccgac
tacggccatgccgcgatcgaggcgccgccggtcaagctcggctcgcaggtgcgccatgcc
agcttcggcaccggcacggtgaccgactacgaaggcaccggcgcgcacgcgcgggtgcag
gtcaacttcgacgacgccggcagcaaatggctggtattggcctatgcgaacctgcagcca
ctctag
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