Lysobacter antibioticus ATCC 29479: GLA29479_4608
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Entry
GLA29479_4608 CDS
T04526
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLA29479_4608 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laq03019
]
GLA29479_4608 (recQ)
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_4608 (recQ)
Enzymes [BR:
laq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLA29479_4608 (recQ)
Messenger RNA biogenesis [BR:
laq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GLA29479_4608 (recQ)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GLA29479_4608 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
HHH_5
HHH
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALN65439
UniProt:
A0A0S2E4V1
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All DBs
Position
5043378..5045192
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AA seq
604 aa
AA seq
DB search
MQQPALELLHRVFGHTAFRGEQAQIVQHVIDGGDALVLMPTGGGKSLCYQIPSLLREGCG
LVISPLIALMQDQVEAMRQLGVRAAYLNSTLDAAEAAAVERQLLDGELDLLYVAPERLLS
PRCLSLIDRARISLFAIDEAHCVSQWGHDFRPEYRELTILHERWPDIPRIALTATADAPT
QREIAERLNLEDARRFVSSFDRPNLRYRVVHKDNGTRQLLDFLSAHRGDSGIVYAFSRKR
VESIAEQLVAAGIRALPYHAGMDASLRAGNQRRFLQEDGVVMVATIAFGMGIDKPDVRFV
AHIDLPKSIEGYYQETGRAGRDGEPAEAWLCYGLGDVVNLRQLIQQGEAGEERKRLELRK
LDSLLGFCESTECRRKSLLGWFGEPHPGGCGNCDNCLEPPQSWDGTEAARKALSCVYRTG
QRFGAGHVIDVLRGAETEKITRFNHEQLSTFGIGSDLDAKQWSSVFRQLVAGGLLEADIE
RHGALRLTADSGPVLRGERSLRFRTEAPKAAGGARKSRGGASAAPMIDLDPESLVRFNAL
REWRSTTAREQNVPAYVIFHDSTLRAIAEHAPDDLDELARIPGIGASKLDRYGEAVLQHL
FDQG
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcccgcactcgaactcctccatcgcgttttcggccataccgcgttccgcggc
gaacaagcccaaatcgtccaacacgtgatcgacggcggcgacgccctggtgctgatgccg
accggcggcggcaagtcgctgtgttatcagatcccgtccttgctgcgcgaaggctgcggc
ctggtcatttcgccgctgatcgcgctgatgcaggaccaggtcgaggcgatgcgccagctc
ggcgtgcgcgcggcctatctcaactccaccctcgacgccgccgaagccgcggcggtcgag
cggcagttgctcgacggcgaactcgacctgctctacgtcgctcccgagcgcctgctgagc
ccgcgttgcctgtcgctgatcgaccgcgcgcggatctcgctgttcgcgatcgacgaggcc
cactgcgtatcgcaatggggccacgacttccgccccgaataccgcgaactgaccatcctc
cacgagcgttggccggacatcccgcgcatcgccctgaccgcgaccgccgacgcgccgacc
cagcgcgaaatcgccgaacgcctgaacctggaagacgcgcgccgcttcgtcagctccttc
gaccggcctaacctgcgctaccgcgtcgtccacaaggacaacggcacccgccagctgctc
gatttcctcagcgcgcatcgcggcgacagcggcatcgtctacgccttctcgcgcaagcgc
gtggaatcgatcgctgagcaactggtcgccgccggcatccgcgccctgccctaccacgcc
ggcatggacgcctcgctgcgcgccggcaaccagcggcgtttcctgcaggaagacggcgtg
gtcatggtcgcgaccatcgccttcggcatgggcatcgacaaacccgacgtgcgtttcgtc
gcccacatcgacctgcccaagtcgatcgagggctattaccaggaaaccggccgcgccggc
cgcgacggcgaaccggccgaggcctggctgtgctacggcctcggcgacgtggtcaacctg
cgccagctcatccaacaaggcgaagccggcgaagagcgcaagcgcctggaactgcgcaaa
ctcgattccttgctggggttctgcgaatccaccgagtgccggcgcaagagtctgctcggg
tggttcggcgaaccgcatccgggcggctgcggcaattgcgacaactgcctggagccgccg
caaagctgggacggcaccgaggccgcgcgcaaggccctgtcctgcgtctaccgcaccggc
caacgcttcggcgccggccacgtcatcgacgtattgcgcggagccgagaccgagaagatc
acccgcttcaaccacgaacagctcagcaccttcggcatcggcagcgatctcgacgccaag
caatggagcagcgtgttccgccaattggtcgccggcggcctgctcgaagccgacatcgaa
cgtcatggcgccctgcgcctgaccgccgacagcggcccggtgctgcgcggcgaacgcagc
ctgcgcttccgcaccgaagcaccgaaggccgcgggcggcgcgcgcaagtcccgcggcggt
gcgagcgcggcgccgatgatcgacctcgacccggaatcgctggtgcgtttcaacgccctg
cgcgagtggcgttcgaccaccgcgcgcgagcagaacgtcccggcctatgtgatcttccac
gacagcaccttgcgcgcgatcgccgagcatgcgccggacgatctcgacgaactggcgcgt
attcccgggatcggcgccagcaagctggatcgctatggcgaggcggtgttgcagcatttg
ttcgatcaagggtga
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