Lysobacter antibioticus ATCC 29479: GLA29479_4739
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Entry
GLA29479_4739 CDS
T04526
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLA29479_4739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laq03019
]
GLA29479_4739
03009 Ribosome biogenesis [BR:
laq03009
]
GLA29479_4739
Enzymes [BR:
laq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GLA29479_4739
Messenger RNA biogenesis [BR:
laq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GLA29479_4739
Ribosome biogenesis [BR:
laq03009
]
Prokaryotic type
rRNA processing factors
GLA29479_4739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALN65569
LinkDB
All DBs
Position
5219257..5222658
Genome browser
AA seq
1133 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GADRHGFLPLKEISRDYFQPGVDHNKAGLRELLREGQEIVVQVDKEERGNKGAALTSFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAALKDAMDKLTIPDDMGVIIRTAGVGRDAEELQ
WDLDYLVSVWKAVTDAALSKQAPFLIYQESRLIIRALRDYMRPDIGEILVDTDEMYAEAR
EFVEQVMPHNLRKLKKYADDTPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQMRLRDLGGLVVIDFIDMASNRHQRDVENR
LQNALKQDRARVQIGRISRFGLLELSRQRLRPSLGESSQLVCPRCDGHGRMRSVESMSLS
ILRIAEEHAMKENTGQVLVQAPTEIANYLLNEKRRALTEIEQRHGAPIVIVADEQLETPH
YEVTRVRENEIGEESSKPSYQRGTQRKLPLHALTKAHLNIPDAPIVTNVKPLQPAPLREP
REPAVAAAPAPAPAPVAAPTHSVGLVERILRIFRGPSQPAPAPAEPAARSSEGRGRNDRN
GQRRGENRNNAGKGGRDGGRRDEQQRRDEPRRDEQRRDKPAQNAQPQAAQQQPKQKQQTQ
QQPKPQQAQQAQQPKPPKPQNEERAAQAGGGTPRPPREPRPPRQDAPAPAEAVAAAAIVP
AAVAAASASTGAPIAVPTVPSVSDETALKTEAAVAAVAADNAGSEPRDTDEAAGEGGGRR
RRGRRGGRRRRRGNGEAAVGGEGQGQDDNAFDDEDEIGGEPAAAPAAANRSQPEFDFDDE
GSAPAPRAQAAAVAAPAAVAAVAASRVFSPAPETAVEPKASFANLGHEAQAAVSEPSSAQ
PQIESVRVEPSRNAYVAAEPVVSEPVAEPVLEAAMPVITRLPEETVAVPAEIVTPAQSAV
AAIEQAQPALQQPAPHQPALQAAAPRNEDVEPVVESTSALVEETRVEDTVVEQAVIEQTP
VEPTVVQPVAEAPKAEARPAQVEPAVAASAATGSVEPKAADTAAAEAISVEAAPVEPAQA
DAGNAAPATTPRTAGLFDALPHPVEPARTDAANAAVEGEQDAADGSSDDERRA
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgatcaatgcgacgcaggcggaagaactgcgcgtcgccatcgtcgac
ggccaatccctgtacgacatcgatatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccgcatcactcggctcgaaccttcgctggaagcggcgttcgtcgactac
ggcgccgaccgtcacggcttcctgccgctgaaggaaatctcccgcgactatttccagccc
ggcgtcgaccataacaaggccggcctgcgcgagctgttgcgcgaaggccaggaaatcgtc
gtccaggtcgacaaggaagagcgcggcaacaagggcgccgccctgaccagcttcatctcc
ctggccggccgctacatggtgctgatgccgaactccccgaccgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctcaaggacgcgatggacaagctgaccatcccc
gacgacatgggggtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcaa
tgggacctggactacctggtcagcgtctggaaggccgtcaccgacgccgccctgagcaag
caggccccgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
atgcgtccggacatcggcgagatcctggtcgataccgacgagatgtacgccgaagcgcgc
gagttcgtcgagcaggtcatgccgcacaacctgcgcaagctgaagaagtacgccgacgac
accccgctgttcaaccgcttccagatcgagtcgcagatcgagaacgcttacgagcgcacc
gtccgcctgccctccggcggcgccctggtgatcgaccagaccgaagccctgaccgcgatc
gacgtcaactcggcgcgcgcgaccaagggcggcgacatcgaggaaaccgcgttcaacacc
aacctggaagcggccgaagaagtcgcgcgccagatgcgcctgcgcgacctcggcggcctg
gtggtgatcgacttcatcgacatggcctccaaccgccatcagcgcgacgtcgaaaaccgc
ctgcagaacgccctcaagcaggaccgcgcccgcgttcagatcggccgcatctcgcgcttc
ggcctgctcgaactgagccgccagcgcctgcgtccctcgctcggcgagtccagccagctg
gtctgcccgcgttgcgacggccacggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcctgcgcatcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtgcag
gccccgaccgaaatcgccaactacctgctcaacgagaagcgccgcgcgctgaccgagatc
gaacagcgccacggcgcgccgatcgtgatcgtcgccgacgagcagctcgagaccccgcat
tacgaagtcacccgtgtgcgcgaaaacgagatcggcgaagagtcgtccaagcccagctac
cagcgcggcacccagcgcaagctgccgctgcatgcgctgaccaaggcccatctgaacatt
ccggatgcgccgatcgtcaccaacgtcaagccgctccagccggctccgctgcgcgaaccc
cgcgagcccgccgtggccgcggctcccgccccggcaccggcgccggtcgccgctccgacc
cattcggtcggcctggtcgagcgcatcctgcgcatcttccgtggcccctcgcagcccgct
ccggctccggccgagccggccgcgcgcagctccgaaggccgtggccgcaacgatcgcaac
ggccagcgccgtggcgagaaccgtaacaatgccggcaaaggcggacgcgacggcggtcgc
cgcgacgagcagcagcgccgcgacgaaccgcgtcgcgacgagcaacgtcgcgacaagccg
gcgcagaacgcccagccgcaggccgcccagcagcagcccaagcagaagcagcaaacgcag
cagcagccgaagccgcagcaagcgcagcaggcgcaacagcccaagccgcccaagccgcag
aacgaagagcgtgccgcccaggccggcggcgggaccccgcgtccgccgcgcgaacccagg
ccgccgcgccaggacgctccggctccggccgaagccgtcgccgccgcagcgatcgtgccg
gccgccgtggccgccgcatcggccagcaccggcgcaccgatcgccgtgcccaccgtgccg
agcgtcagcgacgagaccgcactgaaaaccgaagccgctgtcgcggccgtcgccgccgac
aacgccggcagcgagccgcgcgacaccgatgaagccgcaggcgaaggcggcggccgtcgc
cgtcgtggccgccgcggtggtcgccgccgtcgtcgtggcaacggcgaagccgctgtcggt
ggcgaaggccagggccaggacgacaacgcgttcgacgacgaagacgaaatcggcggcgaa
cccgcggcggccccggccgcggcgaaccgttcgcagcccgagttcgacttcgacgacgaa
ggcagcgcaccggcgccgcgcgcccaggccgccgcagtcgctgcacccgcagccgttgcc
gccgtcgccgccagccgcgtgttcagcccggccccggaaacggcggtcgagccgaaggct
tcgttcgcgaacctcggccacgaggcccaggccgcggtcagcgagccgtcgtccgcgcag
ccgcagatcgagtcggtccgggtcgagccctcgcgcaacgcctatgtcgccgccgagccg
gtcgtgagcgagccggtcgccgagcccgtgctggaggcggcgatgccggtcatcacccgc
ctgcccgaggaaacggtcgcggtgccagccgaaatcgtcacgcctgcgcagagcgccgtc
gcggcgatcgaacaggcgcagccggctttgcagcagcctgccccgcaccagcctgccctg
caggctgcggcgccgcgcaacgaggacgtcgaacccgtcgtcgagtcgacttcggccctg
gtcgaagagacccgcgtcgaggacaccgtggtcgaacaggccgtgatcgagcagaccccg
gtcgaaccgaccgtggtccagccggtcgccgaagccccgaaggccgaggcccgcccggca
caggtcgaaccggccgttgcggcttccgctgcgaccggctcggtcgaaccgaaggccgcc
gacaccgctgccgccgaagccatctcggtagaggctgctccggtcgaaccggcccaggcc
gacgccggcaacgcagcgccggcaacgacgccgcgcaccgctggcctgttcgatgccctg
cctcatccggtcgaaccggcccgcaccgacgcggccaatgccgccgtcgaaggcgagcag
gatgcggccgacgggtcgtccgacgacgagcgtcgcgcctga
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