Lysobacter antibioticus ATCC 29479: GLA29479_588
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Entry
GLA29479_588 CDS
T04526
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq00521
Streptomycin biosynthesis
laq00523
Polyketide sugar unit biosynthesis
laq00525
Acarbose and validamycin biosynthesis
laq00541
Biosynthesis of various nucleotide sugars
laq01100
Metabolic pathways
laq01110
Biosynthesis of secondary metabolites
laq01250
Biosynthesis of nucleotide sugars
Module
laq_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
GLA29479_588 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
GLA29479_588 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
GLA29479_588 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
GLA29479_588 (rfbB)
00525 Acarbose and validamycin biosynthesis
GLA29479_588 (rfbB)
Enzymes [BR:
laq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
GLA29479_588 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
ALN61473
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All DBs
Position
complement(613294..614331)
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AA seq
345 aa
AA seq
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MTGGAGFIGGNFVLDAVRKGVKVVNLDALTYAGNLDTLSSLDGNPNHVFIQGDIGDAALL
KRLLAEHRPEAVVNFAAESHVDRSIEGPAAFVQTNVVGTLSLLEQVRDYWKQLDAPARDA
FRFLHVSTDEVYGSLGDTGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNC
SNNYGPFQFPEKLIPLIIAKALAGEPLPVYGDGLNVRDWLFVGDHCAAISRVLEAGRIGE
TYNVGGDAERANIVVVKTICALLDARRPLADGRARESLIAYVADRPGHDRRYAIDADKLK
DELGWAPTVTFEEGIARTVDWYLGNQAWVQRVLDGSYRLERIGQA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggcggcgccggattcatcggcggtaacttcgttctcgatgcggtccgcaaaggg
gtcaaggtcgtcaatctcgacgccctgacttatgcgggcaatctcgacaccctcagcagc
ctggacggcaacccgaaccacgtgttcatccagggcgacatcggcgatgccgccctgctc
aagcgtctgctggccgagcaccgcccggaggcggtggtcaatttcgccgccgaaagccac
gtcgaccgctcgatcgaaggtccggcggcattcgtgcagaccaacgtcgtcggcaccctg
agcctgctcgagcaggtgcgcgactactggaagcagctcgatgcgccggcccgcgacgcg
ttccgtttcctgcacgtgtcgaccgacgaggtctacggcagtctcggcgacacgggcaag
ttcaccgagaccacaccgtatgcgccgaactcgccgtactcggcctccaaggccgcttcc
gatcatctggtgcgggcgttccaccacacctacggtctgccggtgctgaccacgaattgc
tcgaacaactacgggccgttccagttcccggagaaactcatcccgctgatcatcgccaag
gcgctggccggcgagccgctgccggtctacggcgacggcctcaacgtccgggactggttg
ttcgtcggcgatcactgcgcggcgatttcgcgcgtgctcgaagccggccgcatcggcgag
acctacaacgtcggcggcgatgccgagcgggcgaacatcgtcgtggtcaagacgatctgc
gcgctgctcgacgcacgtcgcccgctcgccgacggccgtgcccgcgaatcgttgatcgcc
tatgtcgccgaccgcccgggccacgatcgccgttacgcgatcgatgccgacaagctcaag
gacgagctcggctgggcgcccacggtcacttttgaagagggcatcgcccgtacggtcgac
tggtacctcggcaaccaggcctgggtgcagcgcgtgctcgacggcagctatcgactggaa
cgcatcggccaggcctga
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