Lysobacter antibioticus ATCC 29479: GLA29479_588
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Entry
GLA29479_588 CDS
T04526
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq00521
Streptomycin biosynthesis
laq00523
Polyketide sugar unit biosynthesis
laq00525
Acarbose and validamycin biosynthesis
laq00541
O-Antigen nucleotide sugar biosynthesis
laq01100
Metabolic pathways
laq01110
Biosynthesis of secondary metabolites
laq01250
Biosynthesis of nucleotide sugars
Module
laq_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
GLA29479_588 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
GLA29479_588 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
GLA29479_588 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
GLA29479_588 (rfbB)
00525 Acarbose and validamycin biosynthesis
GLA29479_588 (rfbB)
Enzymes [BR:
laq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
GLA29479_588 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
ALN61473
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All DBs
Position
complement(613294..614331)
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AA seq
345 aa
AA seq
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MTGGAGFIGGNFVLDAVRKGVKVVNLDALTYAGNLDTLSSLDGNPNHVFIQGDIGDAALL
KRLLAEHRPEAVVNFAAESHVDRSIEGPAAFVQTNVVGTLSLLEQVRDYWKQLDAPARDA
FRFLHVSTDEVYGSLGDTGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNC
SNNYGPFQFPEKLIPLIIAKALAGEPLPVYGDGLNVRDWLFVGDHCAAISRVLEAGRIGE
TYNVGGDAERANIVVVKTICALLDARRPLADGRARESLIAYVADRPGHDRRYAIDADKLK
DELGWAPTVTFEEGIARTVDWYLGNQAWVQRVLDGSYRLERIGQA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggcggcgccggattcatcggcggtaacttcgttctcgatgcggtccgcaaaggg
gtcaaggtcgtcaatctcgacgccctgacttatgcgggcaatctcgacaccctcagcagc
ctggacggcaacccgaaccacgtgttcatccagggcgacatcggcgatgccgccctgctc
aagcgtctgctggccgagcaccgcccggaggcggtggtcaatttcgccgccgaaagccac
gtcgaccgctcgatcgaaggtccggcggcattcgtgcagaccaacgtcgtcggcaccctg
agcctgctcgagcaggtgcgcgactactggaagcagctcgatgcgccggcccgcgacgcg
ttccgtttcctgcacgtgtcgaccgacgaggtctacggcagtctcggcgacacgggcaag
ttcaccgagaccacaccgtatgcgccgaactcgccgtactcggcctccaaggccgcttcc
gatcatctggtgcgggcgttccaccacacctacggtctgccggtgctgaccacgaattgc
tcgaacaactacgggccgttccagttcccggagaaactcatcccgctgatcatcgccaag
gcgctggccggcgagccgctgccggtctacggcgacggcctcaacgtccgggactggttg
ttcgtcggcgatcactgcgcggcgatttcgcgcgtgctcgaagccggccgcatcggcgag
acctacaacgtcggcggcgatgccgagcgggcgaacatcgtcgtggtcaagacgatctgc
gcgctgctcgacgcacgtcgcccgctcgccgacggccgtgcccgcgaatcgttgatcgcc
tatgtcgccgaccgcccgggccacgatcgccgttacgcgatcgatgccgacaagctcaag
gacgagctcggctgggcgcccacggtcacttttgaagagggcatcgcccgtacggtcgac
tggtacctcggcaaccaggcctgggtgcagcgcgtgctcgacggcagctatcgactggaa
cgcatcggccaggcctga
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