Leisingera aquaemixtae: R2C4_06330
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Entry
R2C4_06330 CDS
T06085
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
laqu
Leisingera aquaemixtae
Pathway
laqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2C4_06330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laqu03019
]
R2C4_06330
Messenger RNA biogenesis [BR:
laqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R2C4_06330
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QDI75385
LinkDB
All DBs
Position
955709..957376
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AA seq
555 aa
AA seq
DB search
MSSERLIYLPLGGAGEIGMNAYVYGYGPKDKERLVLVDLGVTFPDMDTTPGVDLIMPDIT
WLKQRADRLEGIFITHGHEDHIGAIAHMYGHLNVPVYARAFTANLARRKMEEAGHDPANV
HTVQAWPEVTRLGPFTIGVAPMSHSIPESGGLVIDSPAGRVVHTGDFKLDANPLVGEPFD
PGMWAQIAGDGVQALVCDSTNVFSQHPGRSESELPEEITKLFAEAKGLVAATTFASNVAR
VKTLAVAAEKAGRSVVLLGRAMRRMIEAAVETGVLTEFPKTISPEDAANVPRDNLMLITT
GSQGERRAASAQLARGKYRGLELKEGDLFLFSSKTIPGNEKGVIRIINQFSEMGVDVVDD
SSGLYHVSGHANRPDLEEVHRLLKPKMLIPMHGEHRHLRQHARLGEEKGIASAVVVNGMM
MDLTGDVPKVTEWIETGRTYLDGTVKYGAMDGIVRDRIRMALNGHVLVTVILDEEDEPLG
EPWCDVKGLPETGTSNAALVEVMEEDLNQFLMRAGAKTLRDDDKLEQELRRIARQSAFSE
IGKKPEVTVVVSRMR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgaaagattgatctacctgcccctcggcggggcgggtgaaattggcatgaat
gcctatgtctatggctacggcccgaaggacaaggaacgcctggttctggtcgacctgggc
gtgaccttccccgatatggacaccaccccgggcgtggacttgatcatgcccgacatcact
tggctgaagcagcgcgctgaccggctggaggggatctttatcacccacgggcatgaggac
cacattggcgccatcgcccatatgtacgggcatctgaacgtgcccgtctacgcccgcgcc
ttcaccgccaatctggcgcgccgcaagatggaggaagcaggccacgacccggccaatgtg
cacaccgtgcaggcctggcccgaggtgacgaggcttggccccttcaccatcggcgttgcg
ccgatgagccactcgatccccgaaagcggcggactggtgatcgacagcccggcagggcgg
gtggtgcacaccggcgacttcaagctggacgccaacccgctggtgggcgaacccttcgac
cccgggatgtgggcgcagattgcaggcgacggcgttcaggcgctggtctgcgattccacc
aatgtgttctcgcagcatccgggccgttcggaatccgaactgccggaggagatcaccaag
ctgtttgctgaggccaaggggctggtggccgcgaccacttttgcctccaatgtggcccgt
gtgaaaaccctcgccgtggctgccgagaaggcgggacgttccgtggtccttctgggccgc
gccatgcgccgcatgatcgaggcggcggtcgaaaccggcgtgctgacggagttcccgaag
acgatcagccccgaggacgccgccaacgtgccgcgtgacaacctgatgctgatcaccacc
ggcagccagggcgaacgccgcgccgccagcgcgcagctggcgcgcggcaagtaccgcggg
ctggagctgaaggagggcgacctgttcctgttctcctccaagaccattccaggcaacgaa
aagggcgtcatccgcatcatcaaccagttctccgaaatgggggtggatgtggttgatgac
agctcgggcctctaccacgtctcgggccatgccaaccgtccggacctggaggaggtgcac
cgcctcttgaaacccaagatgctgatcccgatgcatggcgagcaccgccacctgcgccag
cacgcccgcctgggcgaggagaagggcatcgccagcgccgttgtcgtcaacggcatgatg
atggacctgacaggcgacgtgccgaaagtgaccgaatggatcgaaaccgggcgcacctat
ctggacggcaccgtcaaatacggcgccatggacgggatcgtgcgcgaccgtatccgcatg
gctctgaacggccatgtgctggtgacggtgatcctggacgaggaagacgagccgctgggc
gaaccctggtgcgatgtcaagggcctgcccgaaaccggcacctcgaacgcggcactggtc
gaggtgatggaagaggacctaaaccagttcctgatgcgggcaggcgccaagaccctgcgc
gatgacgacaagctggagcaggagctgcgccgcatcgcccgccagagcgccttcagcgag
atcggcaagaagccagaggtcacggtggtggtcagccgtatgcgctga
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