Leisingera aquaemixtae: R2C4_07220
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Entry
R2C4_07220 CDS
T06085
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
laqu
Leisingera aquaemixtae
Pathway
laqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2C4_07220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laqu03019
]
R2C4_07220
Enzymes [BR:
laqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R2C4_07220
Messenger RNA biogenesis [BR:
laqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R2C4_07220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
NAT10_TcmA_helicase
Fe-ADH
ERCC3_RAD25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QDI78041
LinkDB
All DBs
Position
complement(1135451..1136749)
Genome browser
AA seq
432 aa
AA seq
DB search
MGLPEKLLARLQDMGLNDPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPLIAQMMQ
YGRKPAANTVRGLVLAPTRELANQIADTLKGLTEGTPMKVGLVVGGVSINPQISRIAKGT
DILVATPGRLIDILDRGALDLGSCDFLVLDEADQMLDLGFIHTLRKIAALLPAERQTMLF
SATMPKQMNEIANSYLQSPVRIEVSPPGKAADKVTQSVHFIAKAEKLSLLKELLAEHKHE
RALVFGRTKHGMEKLMKVLDKAGFAAAAIHGNKSQGQRERALAAFKSGDIKVLVATDVAA
RGLDIPDVKHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMEELKAIQKVMKI
TIPVASGRAWEAMPDPAAPAGKPGGRPGGRRGGSKPGGQRRRGGAGSSSGQGKPQGGAPA
NAQRRGQKQRAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggggcttcctgaaaagctcctcgcccgtctccaggacatgggcctcaatgaccccacc
ccgatccaggcccgcgccattccgcatgccttgaacggcaaggacgtgctgggcctggcg
cagaccggcaccggcaagaccgccgcttttggcgtgccgctgatcgcgcagatgatgcaa
tacggccgtaaacccgccgccaataccgtgcgcggcctggtgctggcccccacccgcgag
ctggccaaccagatcgccgacaccctgaagggcctgaccgaaggcaccccgatgaaggtc
ggcctggtggttggcggcgtctccatcaacccgcagatctcccgcattgccaagggcacc
gacatcctggtcgccaccccgggccgcctgatcgacatcctcgaccgcggcgcgctcgac
cttggctcctgcgacttcctggtgctggacgaggccgaccagatgctggacctcggcttc
atccacaccctgcgcaagattgcggcgctgctgcccgccgaacgccagaccatgctgttc
tcggccaccatgcccaagcagatgaacgagatcgccaactcctacctgcaaagcccggtc
cgcatcgaagtctcgcctccgggcaaggctgccgacaaggtcacccagtcggtgcacttc
atcgccaaggccgaaaagctgagcctgctgaaggaattgctggcagagcacaagcacgag
cgcgcgctggtgttcgggcgcaccaaacacggcatggaaaagctgatgaaggtgctggac
aaggcaggctttgccgccgccgcgatccacggcaacaaaagccagggccagcgcgaacgc
gccctcgccgcattcaaatccggcgacatcaaggtgctggttgccaccgacgtggccgcc
cgcggcctggatatcccggacgtcaagcacgtctacaactacgagctgccgaacgtgccc
gacgcgtatgtgcaccgcatcggccgcaccgcgcgcgcgggcaaggatggcgccgccatc
gccttctgcgccccggatgagatggaagagctgaaagcgatccagaaggtgatgaaaatc
accattcccgtcgcctccggccgcgcctgggaagcgatgcctgacccggcagcgcccgcc
ggcaaaccgggcggacgtcccggtggacgccgcggcggcagcaagcccggcggccagcgc
cgccgtggcggcgccggcagcagcagcggccagggcaaaccgcagggcggggcccccgca
aacgcccagcgccgcggccagaaacagcgcgcgcgctga
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