Leisingera aquaemixtae: R2C4_07530
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Entry
R2C4_07530 CDS
T06085
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
laqu
Leisingera aquaemixtae
Pathway
laqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2C4_07530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laqu03019
]
R2C4_07530
03009 Ribosome biogenesis [BR:
laqu03009
]
R2C4_07530
Enzymes [BR:
laqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R2C4_07530
Messenger RNA biogenesis [BR:
laqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R2C4_07530
Ribosome biogenesis [BR:
laqu03009
]
Prokaryotic type
rRNA processing factors
R2C4_07530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QDI75597
LinkDB
All DBs
Position
1194779..1197706
Genome browser
AA seq
975 aa
AA seq
DB search
MANKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEEEEKPSKPKRSRRS
KSSAKAAKASSGDAVETKEVGVSDEKTGEIAGMETIDLSDSAAAADVPAELAEVPEGSSP
VERVAETPVEEPEDENEAPAEAAEAGASAVAGDEAADEAEAAAAEAETEADAEEVKAEDA
AGDEGDENGESRRADAATKDETIESVAEEDDSEDIRPPRKPRPRRYKIQEVIKVRQVLLV
QVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIASELDVP
TGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDL
YNRDIDEVLVEGDRGYRIAKDFMKMIMPSHAKNVKHYQDALPLFARYQVESYLGGMFNPV
VQLKSGGYIVIGVTEALVAIDVNSGRATKEASIEETALKTNLEAAEEVARQLRLRDLAGL
IVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTA
PCPHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREVLVRCPVSIANFLMNQKREHIAQI
EARYGLSVRIEGDAHLVSPDFVLEKFKTASRTVPAATAPVVSVDTSIMEQVDADEAQQDE
EEAPVAVEAAEDDAQQDDKPKRKRRRRRRRKSGNGDQAQAGENGEDTSEDQDQPKEEADE
ALEADSEAEEPAAEDVKEKKPSRTRTRSRSRKPKSKQAEADAVAAEGSEAAAEEAPAAAE
APVAETVAEAQADETAEPAVEAVADSTDAAAAQDAEPAAQAEQAAPAEEPAAAQEAEAEA
PAEAAAEAAEEQPSEEPDAEPAEEQTAVEEAAELEPAAAPEEEKQPEPAMAGAAAEREPA
ASSKPKRRGWWSMGG
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataagatgcttattgacgccacccacgcggaagaaacccgcgttgtggtggtc
gatggaaacaaggttgaggagttcgactttgagtccgaaaacaaacgccagcttgctggc
aatatctacctcgcaaaagtaacccgggtcgaaccgtcgctgcaggcggcgtttgttgac
tatggcggcaaccgccatggcttcctggcgttctcggaaatccacccggattattaccag
atcccggtggccgaccgcgaagcgctgatggaagaagagcgcgcctatgccgaggcgatg
cgcgcgcgcgacgaggaagaagaagaaaaaccgtccaaacccaagcggtcgcgccggtcc
aagtcttcggccaaggcggccaaggcctcctccggcgatgcggtggagaccaaggaagtc
ggcgtctctgacgagaagaccggcgaaatcgcagggatggaaaccatcgacctgagcgat
agcgccgcggctgcggatgtgcctgcggaactggccgaagtgcctgaaggctcctcgccg
gtggaacgtgttgcggaaaccccggtggaagagccggaagacgagaatgaagcccccgct
gaggcggcagaggcgggtgcttctgctgtggcgggtgacgaggctgcggacgaagctgag
gcagcagctgccgaggccgaaaccgaagcggacgccgaagaagtcaaggcagaggacgct
gccggcgacgagggcgacgaaaacggtgagtcccgccgggccgacgcggccaccaaggat
gaaaccatcgaatccgtcgccgaagaggacgacagtgaggacatccgtccgccgcgcaaa
ccccgcccgcgccgctacaagatccaggaagtgatcaaggtgcgccaggtgctgctggtg
caggtcgtcaaggaagagcgcggcaacaagggcgcagcgctgaccacatatctgtcgctg
gccggccgttactgcgtgctgatgccgaacaccgcccgcggcggcggcatctcccgcaag
atcaccaatgctgccgaccgcaagaagctcaaggacattgcctccgaactggacgtgccg
accggcgcgggcctgatcgtgcgtaccgccggggccaagcgcaccaaggcggagatcaag
cgcgactacgaatacctgcagcgcctgtgggagcagatccgcgagctgacgctgaaatcc
atcgcgccggccaagatctatgaggaaggcgacctgatcaaacgctcgatccgcgatctt
tataaccgcgacatcgacgaggttttggtggaaggcgaccgcggctaccgcatcgccaag
gacttcatgaaaatgatcatgccgtcccacgccaagaacgtgaagcattaccaggacgcg
ctgccgctgttcgcccgctaccaggtcgaaagctacctgggcggcatgttcaacccggtc
gtgcagctgaaatccggcggttacatcgtcatcggcgtgaccgaggcgctggtggcgatc
gacgtgaactccggccgggcgaccaaggaagcctcgattgaggaaaccgcgctcaagacc
aacttggaggccgccgaagaagtggcgcgccagctgcgcctgcgcgaccttgcgggcctg
atcgtcatcgacttcatcgacatggacgagcgcaagaacaacgccgcggtcgaaaagcgc
atgaaggataagctgaagaccgaccgcgcccgcatccaggtgggccggatctcgggcttt
ggcctgatggaaatgtcgcgccagcggctgcgccccggcatgatcgaggcgaccaccgca
ccgtgcccgcattgccacggcaccggactgatccgctctgacgactcgatggcgctgtcg
attctgcgccagatcgaggaagagggcacccgccgccgctcccgcgaggtgctggtgcgc
tgcccggtctccatcgccaacttcctgatgaaccagaagcgcgagcacatcgcccagatc
gaggcgcgttacggcctgtccgtgcgcatcgaaggcgacgcgcatctggtcagcccggac
ttcgtgctggagaagttcaagaccgcttcccgcaccgtgcctgcggccaccgctccggtg
gtgtcggtggatacctcgatcatggagcaggtggacgctgacgaagcgcagcaggacgag
gaagaggcccccgtcgccgttgaggccgctgaggacgatgcgcagcaggacgacaagccc
aagcgcaagcgccgccgccgccgccgccggaagtccggcaacggcgatcaggcccaggcg
ggcgagaacggcgaggacacctccgaagaccaggatcagccgaaggaagaggctgacgag
gcgctggaagctgactctgaggcggaagagcctgccgcggaagacgtgaaggagaagaag
ccctcccgcacccgcacccggtcccgttcgcgcaaaccgaagagcaagcaggccgaggca
gacgcagttgctgcggaaggctccgaagccgccgcagaggaagcgcccgccgctgccgaa
gcgcctgtggctgagacggtcgcggaagctcaggctgatgagactgcagaaccggcggtt
gaggccgttgcggacagcacagacgccgctgccgcccaggacgcagagcccgctgcgcaa
gctgaacaggccgctccggcagaagaacctgctgctgcgcaagaggcagaggctgaggcg
cctgcagaagctgctgccgaagcggccgaagagcagccttctgaggaacccgatgcggaa
ccagccgaggagcagactgctgtggaagaggccgctgagctggaacccgccgctgcgccg
gaagaggaaaaacagccggagcctgccatggctggcgccgccgctgagcgggaacccgca
gcctcgtccaagccgaaacgccgcggctggtggtcgatgggcggctga
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