Leisingera aquaemixtae: R2C4_21070
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Entry
R2C4_21070 CDS
T06085
Symbol
tssB
Name
(GenBank) type VI secretion system contractile sheath small subunit
Organism
laqu
Leisingera aquaemixtae
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
T6SS_VipA
VipB
HEAT_GCN1
Motif
Other DBs
NCBI-ProteinID:
QDI78287
LinkDB
All DBs
Position
unnamed3:complement(88032..92492)
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AA seq
1486 aa
AA seq
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MADSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMSDLLGKSKVEQPAIADRKF
LEIDADNFDERMKGLAPRAAFTVPNTLTGDGNLSVDLTFESLADFSPGAIAAKVDALRPL
LEARTQLQNLMAYMDGKTGAEALIETILNDPSLLAAVSAPAADAQTAAALDSLRTLELPE
AQADTTGDVLAGLAAQAPEDAEAEDAAGGVLAGLRAAAREEPEADDGAADVLAGLSAAAP
EDEDQGDEAGEALASLAAAGVPDAGESDQTGAVLEGLAQAEMPDAEEDTSGAGLAGLAAQ
EPEETAGEDAAGAALESLAAVEIAETAAEDASGVLDALADLDVPEAAVEEDHSAVLQGLA
PAEVEDEAEDAAGAALESLAAVEVSEDAEEDVSGVLSGLADLEQAEEDSGAQAASALESL
ADAAVPDAEEEDGLEDVLGSLLEDAAEEEDAASETEDALESLAAAGIEDADDGGAEDILE
GLLDAAPDDAPEEEDLSAVLDSLEAPEETEEADAAGDVLAGLADDLPEGDPEDETDLDDI
LGGLDAPDEETSEDGLTAALDTLKAPEDEEGVDSGLDDLLADLGSGVLEDEAEEDTADVL
AELAGADEAEDTDSGDADLDALLAGGLDEDDDLDSLLGGLDAEEDTESDPDTLLGDAADE
AVAEDAAEDSGLDDLLSGLDAGEEVDSADLDALLADDEAAEEDGGDDLDALLGGLDETVE
DAGEDAGDSGLDDLLGGLDDDGGEKSGDADGDDLDELLGGLDEDEAGEDASLDDLLGGLG
SDEDGDGDLDSLLAGLGEEADAEEADGAESAEDDLDALLGGLGDADADLDSLMGDDGDVD
LDDLLGGLGDDDEDTAGDGSDDLDALLGDLDDGGNAPAAETAGAELSDEPEFAYGTMSAE
RPAAQKLARKRFRVAVMGDFSGRAAKGQLETGDALAARKAILLDPDTVEDVIERFATELV
LPIGKQGAGIAVKLEDLDGLHPDELYENVELFSELAGLRKQLQSGATADHAAKTLKAWAE
KYGTKARAPKRTSAGNAVPADKRLSAFQQLIKDTGITPRAASPVEDLLARVVGPHIRALP
DPDLAAMQKAVDEALSDAMRLVLHHPEFQSVEAQWRSLDLMARSIEADDTLDVMLYDISA
EELAADLAAEDDLSRTGLVRLLTEEPLDEENGRGGYSVLIGMYQFEETPPHAELLGRIAR
VAAHVDAPFFASISPEFLKTPKAERPKLVAEAWDTLQGMAEAGHLGLVSPRFLLRRPYGE
KTEPCYEFDFEEFTETEGLKGMLWANPVVLVAILLGRSFKEFGPSLQLGKIMSLGGMPYH
YVSDRFGDQVALPCTERNIDLNKIAMAQERGFMAVSAVKGRDEVRLTSFNSLKGSQILGP
WTGLPAPEPSPPDPRGLPEPPVPAGGGDDNDLDLRGDDGGDFGLDDLDLGEDDDGLDLSG
LDFDAEDGGLDDLDDLLSSFGDDGDEDDDDGGEEMDAELAALLDDL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagctcgcagaaattcatcgcccgcaaccgggcgccgcgcgttcagatcgaa
tatgatgtggagctctatggcgccgagaagaaggtgcagctgccctttgtgatgggggtg
atgagcgatcttttggggaaatccaaggtcgaacagcccgcgattgcagaccgcaaattc
ctggaaatcgacgccgacaacttcgatgagcggatgaaggggctggcgccgcgcgccgcc
ttcaccgtgcccaacacgctgaccggcgacggcaatctttcggttgatctgacgtttgag
agcctcgccgatttctcgcccggtgccattgccgccaaggtcgatgcgctgcggccgctg
ctggaggcgcgcacccagttgcagaacctgatggcctatatggacggcaagaccggggcc
gaggcgctgatcgagacgatccttaacgacccgtcgctgctggctgcggtgtcggcgccg
gcggcggatgctcagaccgcggcggcgctcgactccttgcgcactctggagcttccggag
gcgcaggcggacaccacgggtgacgtgctggcggggcttgccgcacaggccccggaggac
gctgaggcagaggatgctgcgggcggcgttctggcagggctgcgggcggcagcgcgtgag
gagccggaagcagatgatggtgcagcggatgtgctggccggcctgagtgcggcggcacca
gaagacgaagaccagggcgatgaagccggggaggcgctggcctcgctggctgctgcgggg
gttccggacgccggagagagcgatcagacgggcgccgtgctggaaggcttggcgcaggca
gaaatgcccgatgcggaagaggatacgtccggcgctgggctcgccgggctggcggcgcaa
gaacctgaggagactgccggggaggatgccgctggcgcggcgctggagagccttgcggcg
gttgagattgctgagaccgcggcggaggacgcttcgggcgtgctggacgcgctggcggat
ctggatgtgccggaggccgctgtggaggaggatcattctgcggtactgcaggggctcgcc
ccggccgaggtggaggacgaggctgaagacgctgcaggggcggcgctggaaagcttggct
gccgtggaggtttccgaagacgcggaggaagatgtctccggcgtgctgagcgggctggcc
gatctggaacaggctgaggaagacagcggcgcgcaggccgcgtcggccttggagagcctg
gcggatgcagcagttccggatgctgaggaagaggacggtctggaagacgtgcttggcagt
ctgctggaggatgcagccgaagaggaagacgccgccagcgaaacagaggatgcgctggaa
agtctggccgctgccgggattgaggacgcggatgacggtggagcggaggacattcttgag
ggattgctggatgccgcgccggacgacgcgcccgaagaagaagatctgagcgccgttctg
gacagcctggaagcaccggaagagaccgaagaagcggacgccgccggggatgttctggct
ggtttggcggatgatctgccggaaggcgatccggaggatgagacggatctggacgatatc
ctgggcggccttgacgcgccggatgaagagaccagtgaagatggcctgactgcagcgctc
gacacgctgaaggcgccggaagacgaggagggtgtagacagcggcttggatgatctgctc
gcggacctcggcagcggcgtgctggaagacgaggccgaggaagacaccgctgatgtgctg
gcggaactcgcaggggcagacgaggcggaggacacagacagcggtgatgcggatctggat
gcgcttttggccggcgggctggatgaggatgacgatctggacagtctgctgggcggtctg
gatgcggaggaagacacggagagcgatccagatacactgttgggcgatgcggcggacgaa
gcggttgcagaggacgcggcagaggatagcggtttggatgatcttctcagcggcttggac
gccggggaagaggtggacagcgccgatctggacgcgcttctggctgatgatgaggccgcc
gaagaagacggtggtgatgatctggacgccttgctgggcggattggacgagacggtagag
gacgccggggaggatgccggggacagcggacttgatgatttgctgggcggtctggatgac
gatggcggcgaaaagtccggcgacgctgacggtgatgatctggacgagctgctgggcggg
ctggatgaggatgaggccggcgaggatgccagcctggatgacctgctgggcggccttggc
agcgacgaggacggcgacggtgatctggacagccttctggccggtcttggtgaagaagcg
gacgctgaagaggcggacggcgcggaaagcgccgaagatgacctcgatgcgctgctgggc
gggctgggggacgcggatgcggatctggacagcctgatgggcgatgacggggacgtggac
ctggatgatcttcttggcggtcttggcgatgacgatgaggacaccgccggggatggcagc
gatgatctggatgcgctgttgggggatctggacgacggcggcaacgcgccagcggcagag
actgccggggcggaactctcggacgaaccggagtttgcctatggcaccatgagcgcggag
cggcctgccgcgcagaagctggcgcgcaagcggttccgggtggccgttatgggcgatttt
tcagggagagcggccaaggggcagctggaaaccggcgatgcgctggcggcacgcaaggcg
atcctcttggacccggatacggttgaggatgtgatcgagcgctttgccaccgaactggtg
ctgccgattggcaaacagggcgccgggattgcggtgaagctggaggatctggacggtctg
catccggatgaactctatgaaaacgtggagctgttttccgagctggcgggcctgcgcaag
cagctgcagagcggggcaaccgcggatcacgccgcaaaaacgctgaaggcctgggcggag
aaatacggcaccaaggcgcgggcgcccaagcggacctcggcagggaatgcggtgcctgcg
gacaagcggctgagcgcctttcagcagctgatcaaagataccggcatcaccccgcgtgcg
gcctcgccggtggaggacctgctggcgcgagttgtcggcccgcatatccgggcgctgccg
gacccggacctggcggcgatgcagaaggcggtggatgaggccttgtctgatgcgatgcgg
ctggtgctgcatcatccggagttccagtcggtcgaagcgcagtggcgctcgctggatctg
atggcgcgctcgatcgaggcggacgatacgctggatgtgatgctgtatgacatctcggca
gaggagctggcggcggatctggcggcggaggacgatctgtccagaaccggcttggtgcgg
ctgctgacggaggagccgctggacgaggaaaacgggcgcggcggctattcggtgctgatc
ggcatgtatcagttcgaggaaaccccgccgcatgcagagcttttgggccggatcgcgcgg
gtggcggcgcatgtggatgcgccgttctttgcgtccatttcgccggagttcctgaaaacg
cccaaggcggaacggcccaagctggtggcggaggcctgggacacgctgcagggcatggcg
gaggctgggcatctggggctggtcagcccgcggttcttgctgcggcgcccctatggtgag
aaaaccgaaccctgctatgagtttgattttgaggagtttaccgaaacggaaggcctgaag
ggtatgctttgggccaatccggtggtgctggtggcgatcctactgggccggtccttcaag
gagttcggcccatcgctgcaactgggcaagatcatgtctttggggggaatgccctatcat
tatgtgagcgacaggtttggcgaccaggtggcgctgccctgcacggagcgcaatatcgac
ctgaacaagattgcgatggcgcaggagcgcgggttcatggcggtgagcgcggtcaaggga
cgggacgaggtgcggctgacctccttcaactccttgaagggcagccagatcctggggccc
tggaccggactgccggcgcctgagccttcgccgccggacccgcgcgggctgccggaaccg
ccggttcctgcgggcggcggcgatgataacgatttggacctgcggggcgatgatggcggc
gatttcggcctggatgatctggacctcggggaagatgacgacggcctggatctgagcggc
ctggatttcgacgctgaggacggcggcctagatgatctggatgaccttttgtcgtcgttt
ggggatgacggcgatgaggatgacgatgacggcggcgaggaaatggatgcagagctcgcc
gcgcttttggatgatttgtga
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