Candidatus Liberibacter americanus: lam_1021
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Entry
lam_1021 CDS
T02902
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lar
Candidatus Liberibacter americanus
Pathway
lar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lam_1021 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lar03019
]
lam_1021 (srmB)
03009 Ribosome biogenesis [BR:
lar03009
]
lam_1021 (srmB)
Enzymes [BR:
lar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lam_1021 (srmB)
Messenger RNA biogenesis [BR:
lar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lam_1021 (srmB)
Ribosome biogenesis [BR:
lar03009
]
Prokaryotic type
rRNA helicases
lam_1021 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHA28349
UniProt:
U6B6E4
LinkDB
All DBs
Position
complement(1161236..1162960)
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AA seq
574 aa
AA seq
DB search
MKIVEDIPKVIGDALSERGYFNLTPVQKAILNSDLVDKDILVSAQTGSGKTVAFGLALAP
NLLGDKDLFDSHGAPLALVIAPTRELAMQVGRELEWLYAKTGVVISVCIGGVSINVERRD
LRKGSHIVVGTPGRLCDHIRGKSLDISHLKSVILDEADEMLDLGFRDDIEFILDSSPKKR
RMLMFSATLSPAIITLAKNYQKDAVRINISSDSRQHSDIDYRAMLVRVSDRDNAIVNILR
YHDAKNALVFCSTRASVARYTKVLADHLFQVVALSGELSQQERSNALQMMRDGRARVCIA
TDVAARGIDLPDLDLVIHAELSSNPETLLHRSGRTGRAGRKGISVFVIPQNLQRRAERLL
RDANVSANWEQAPTAAEIIERDSQRMLKDSSLLGPIKEDERKLVDELLSQHSPENIAVGF
LRINRAGRCVPEELNPVSLNSSGRGSYSRGDSKLSRENSRDNFRNSSWFSLSVGSKDKAE
ARWLIPMLCRNIGISRNSIGAIRVQPEQTFIEISSDGVKFLNTSIKLDRGIQIRSLNGGR
PDFKSNRSSGVMNRGTRYGMADRKFSKSRRSFSG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgttgaagatatccctaaagttataggagatgctctttctgagcgggggtat
tttaatttaacacctgtgcagaaagctattcttaattctgatttggttgataaagatatc
ctagtttctgctcaaacaggttctggtaagactgttgcttttggattggctttggctcca
aatcttttgggtgataaggatctttttgatagccatggcgctcctttagctcttgtaata
gctcctactagagaattggctatgcaggttggtcgtgagttagaatggctttatgcaaaa
actggagttgtcatttctgtctgtattggtggtgtgagtatcaatgttgaacgtagggat
ttgcgaaaaggatcgcatattgttgttggaactcctggtaggttatgtgatcatattagg
ggtaagagtttggatatatctcatcttaagtctgtaattcttgatgaagctgatgaaatg
cttgatttgggattccgagatgatattgaattcattttggattcatccccaaagaaacgt
cgaatgttgatgttttcagctactctttctcctgcaattattactttagctaagaattat
cagaaagatgctgtacgcattaatatatcttctgatagtcgtcagcatagtgatatagat
tatcgtgcaatgctagtaagagttagtgatcgcgataacgcgatcgttaatatattgcgt
tatcatgacgcaaaaaacgcattagtattttgttctacacgtgcatctgtagctcgttat
actaaagtattagcagatcatttgtttcaagttgttgctttatctggagagttaagtcag
caagaacgtagtaatgcgcttcagatgatgcgtgatggaagagctagagtatgtatagcg
acagatgttgctgcgcgtggtattgatttaccagatcttgatcttgttatccatgctgaa
ttatcttctaatccagagactttattgcatcgcagtggccgtacaggtagagcgggacgc
aagggtattagtgtttttgttattcctcaaaatttgcagcgccgtgctgaacgtttgtta
agagatgcaaatgtttctgcaaattgggaacaagctccaacagcggcagaaataatagaa
cgtgattctcaaagaatgcttaaagattcatctttgcttggacctattaaagaagatgaa
agaaaacttgtagatgaattattatctcagcattctcctgagaatatagcagttggtttt
ttgcgtatcaaccgtgctggacgttgtgttccagaagaactgaatcctgtttctctcaat
tcttcaggaagaggctcttattctagaggtgattctaaattatcaagggaaaattcgcgt
gataattttagaaattcatcttggttctctctttctgtaggaagtaaagataaagcagaa
gctcgctggttaatacctatgttatgtcgtaacattgggattagtcgcaatagtattggg
gcaattcgtgttcaaccggaacagacttttatagaaatttcatcagatggagtaaagttt
ttaaatacttccattaaattagatagaggtattcagatcaggtctctgaacggcggaagg
cctgattttaaaagtaacagatcatctggtgttatgaatcgtggtactcgctatggtatg
gcggatagaaaatttagtaagtctagaagatcatttagtggttaa
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