Candidatus Liberibacter americanus: lam_460
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Entry
lam_460 CDS
T02902
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lar
Candidatus Liberibacter americanus
Pathway
lar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lam_460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lar03021
]
lam_460 (rpoB)
03400 DNA repair and recombination proteins [BR:
lar03400
]
lam_460 (rpoB)
Enzymes [BR:
lar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lam_460 (rpoB)
Transcription machinery [BR:
lar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lam_460 (rpoB)
DNA repair and recombination proteins [BR:
lar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lam_460 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHA27820
UniProt:
U6B4J9
LinkDB
All DBs
Position
521812..525960
Genome browser
AA seq
1382 aa
AA seq
DB search
MAKGIVFNGLGRERKFFGRIPEIIDIPDLVEVQRASYDKFLMIDHPSDSRPNEGLQDAFR
SVFPVTAFSGAAMLEFVSYEFEPPKFDVEDCLRRNLTYSAPLKIILRLIVFDIDEFTGAK
SIKDIKEQSVYMGDIPLMTEDGTFVINGTPRVVVSQVHRSPGILFDHDKGRASLSGKLLY
ACRIIPNMGLWLDIEFDTKDIIHMRVDRRRKIPVTSFLMALGMDHEEILSTFYSKVSYTK
KGDYWSFPLSSAEIMIGSKLSYNLIDINTGEVVVDSGRKLSPLLFKGFKDKGIECLGIER
DALYGFYVAEDIVNTETGEIYLEAGNEIDEDSLDKIISAGIYDIPTLYVDSASSNAYLRN
TLAADKNENRQDALLDIYRVMRPGDVPTVSAAESMFNYLFSDPDKYDLSAVGRVKMNMRL
NLDAPDTVRHIRKEDAIAIIKVLIDLRDGKGKIDDIDNLGNRRVRSVGEMLKNQYRLGLL
RMERSIKERISLVDIDTVMPQDLINAKPVVSAVRDFFCSSQLSQLEEHVNSLSRITHTRR
LSALGQGGITRARAGFEVRDVHPTHYGRICPAETSEGHNIGLVSSLASFARVNEYGFIET
PYRKVEDGRVTNEVVYLSASEEENCYIAQANSAINEDGLFVDDLVFCRCAGEEVLVPQKN
IHFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMEQIVA
KSSGAAIVAKHAGIVEQVDAMRIVIRVVEENLDPSDSGVDIYRLTKFQRSNQNTCVNQRP
LVKVGDTVRKNDIIADGPSTDSGDLALGRNIVVAFMPWRGYNFEDSMLVSERMVSDDVFT
SIHIGEFEVMARDTKLGPEEITRDIPNISEEGLKNIDECGVICVGAEINPGDILVGKITP
KSESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGISGTVVDVRIFNRHGIEKSERSLSVE
REQIEILDRDRDDEQAILDRNTYSRLMEFLCGQTIVSGPKGFKKNTVLSSDLMTEYPRSQ
WWMFAVKDEKVQRNIESLKARYDSSKSVLENRFKNKVEKIKWGDDMPPGVLRVVKIFVAM
KRKLQPGDKMAGRHGNKGIVSRILPCEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFETH
LGWACVGLGKKIKSLINDYKANGDILPLRTFVQNIVGKGSQYDKLSQYDDKSVLSFADQW
KSGVFVSTPVFDGASEDDISFMIGMAGLDKSGQSILYDGLTGEKFDRPVTVGYIYMLKLN
HMVDDKIHARSIGSYSLVSQQPVGRKSLCGGQRLGEMEVACIQAYGAAYILQEMLTIKSD
DIVGRTKVYESIVSGDHSFETGVPESFNVLIKEIQGLGLSIDLENSRVVNNVNMEEIPDL
SK
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaggtattgtgttcaatggtctcgggcgtgagcgcaagttttttggaagaata
cctgagataattgacatacctgatctcgttgaagttcagagagcgtcttatgataaattt
ttgatgattgaccatcctagtgattctcgtcctaatgagggtttgcaggatgcttttcgt
tcggtatttcctgtcactgcattttctggagctgcgatgcttgagtttgtatcatacgaa
tttgagcctccaaagtttgatgttgaagattgtcttagacgtaatttgacatattctgct
ccattaaagattatattgcgtttgattgtatttgatatagatgagtttactggtgctaaa
tctattaaagatataaaagagcaaagcgtctatatgggtgatatacctttgatgacagag
gatggaacctttgttattaacggtactcctagagttgttgtttctcaagtacatcgttct
cctggtatactttttgatcacgataaaggaagagctagtttgtctggcaaattgctatat
gcatgccgtataatccctaatatgggtttatggcttgatatagaatttgataccaaagat
attatccatatgcgggtggatagacgtcgtaaaattcctgtaacttcttttttgatggct
ttgggaatggatcatgaggagattttatctactttttattctaaggttagttatactaaa
aaaggtgattattggtcttttccattaagttctgctgagataatgataggttcgaaatta
tcttataacttgattgatataaatacaggtgaagttgtagttgatagcgggcgtaagctt
agtccgttgttatttaagggatttaaggataaagggatagaatgcttaggaatagagcgt
gatgctttatatggtttttatgtggcggaagatatagtcaacacggagactggtgaaata
tatcttgaggctggtaatgagattgatgaggatagtttagataaaattatatctgctggc
atttatgatattcctaccctttatgtagattctgcaagtagtaatgcgtatctacgtaat
accttagctgctgataagaatgaaaatcgtcaagatgcgcttttagatatatatcgtgtt
atgcgtcccggtgatgttcctaccgtctctgctgctgagtcaatgtttaattatcttttt
tctgatcctgataaatatgatctttcggctgttggtcgtgttaagatgaatatgcgtctt
aaccttgatgctcctgatactgttcgtcatattagaaaggaagatgccatagctatcatt
aaggtgttgatagatctacgtgatggtaaaggcaagattgatgatattgataatttaggt
aatcgtcgagttcgttctgttggtgagatgttaaagaatcaatatcgactcgggctattg
cgtatggaacgatctattaaggaaagaatttccttggttgatattgatacggttatgccg
caggatttgattaatgctaaacctgttgtgtctgctgtgcgtgattttttctgttcttcg
caattatcacagcttgaggaacatgttaattctctatctcgtattacgcacacccgtcgt
ttgtctgctttgggtcaaggtggtattacaagggcaagagcgggttttgaggttcgtgat
gttcatcctacacattatggacgtatttgtcctgctgagacctctgaaggtcataacata
ggtcttgtaagttcgcttgcgtcttttgctcgtgttaatgaatatggttttattgagact
ccttatcgtaaagttgaagatggtagggtcacaaatgaggttgtatatttatctgcatct
gaagaagaaaattgttatatagctcaagctaattctgctattaatgaagatggtttgttc
gtagatgatttagtattttgtagatgtgctggagaagaagttcttgtacctcaaaaaaac
atacattttatagatgcctctccaaaacaggttgtttctattgcagcatctcttattcct
ttcttggaaaacgatgattcaaaccgtgttcttatgggttgtaatatgcagcgtcaggct
gtcccattgttgaaagctgaagccccttttgttggtactggtatggagcagatagtcgcc
aagagttcaggtgctgctattgtcgcaaaacatgctgggattgtagaacaagttgatgcg
atgcgtatagtaattcgtgttgtagaagaaaatcttgatccttctgattccggagtagat
atttaccgtttgacgaagtttcaacgctctaatcaaaatacttgtgttaatcagcgtccg
ttagtaaaagttggagatacagttcgcaagaatgacattatagctgatggtccatctaca
gattctggagatttagcgcttggtcgtaatatcgtagttgcttttatgccttggcgtgga
tacaactttgaggattccatgcttgtttctgagcgcatggtttctgatgatgtctttact
tctattcatataggagaatttgaggtgatggcacgtgataccaagctaggtccggaggag
ataacacgcgatattcctaatatctcagaggaaggtttaaagaatattgatgaatgtggc
gttatttgtgttggtgctgaaattaatccaggtgatattttagtaggtaaaatcactcct
aagagtgagagtcctatgacgcctgaagagaagctgttgcgagctatttttggtgagaag
gcttcagatgtacgtgatacttcattgcgtgttccaccaggtatttctggtacggttgtt
gatgtgcgtatttttaatcgacacgggattgaaaagagcgagcgttctttgtctgttgaa
agagagcaaattgagattctcgatcgagatagagatgatgagcaggcaattctagatcgt
aatacttatagtagattgatggagtttttatgtggtcagactattgtttctgggcctaaa
ggatttaaaaagaatacagttctttcgagtgatttaatgacagagtatcctcgctctcag
tggtggatgtttgcagttaaagacgaaaaagttcaacgtaatattgaatctttaaaagca
agatatgattcttctaaatctgttcttgaaaatcgttttaaaaataaggttgagaagatt
aaatggggcgatgatatgcctccaggtgttttaagggttgtcaaaatttttgttgctatg
aagcgtaaactgcagcccggagataagatggctgggcgtcatggtaataaaggaattgtt
tctcgtatacttccttgtgaggatatgccttttcttgaagacggcactccggttgatatt
gtgcttaatccgttaggtgttccatctcgtatgaatgttggtcaaatttttgagactcat
cttggttgggcttgcgttggtcttggaaagaaaatcaaaagtcttataaatgattataag
gcaaatggtgatatacttcctttgcggacttttgttcaaaatatcgttggtaaaggttct
caatatgataaattatctcaatatgatgataagtctgtattgagttttgcagatcagtgg
aagtcgggtgtatttgtttcaactcctgtttttgacggtgccagcgaagatgatataagt
tttatgattggtatggctggattggataaaagcggacaatctatcctttatgatggcctt
acaggagagaaatttgaccgtccagtaactgttggttatatttatatgttaaagcttaac
catatggttgatgataagattcatgctcgctctatcggtagttattctcttgtatcacag
cagcctgtaggaagaaaatcattgtgcggagggcaacgcttgggagaaatggaagttgct
tgtatacaagcttatggtgctgcgtatatcttgcaagaaatgcttactattaaatctgat
gatattgtgggacgtactaaggtttatgaatctatcgtttcaggagatcattcttttgaa
acaggagttccagaaagtttcaatgtgttgataaaagaaatacaaggtttaggcttgagt
attgatttagaaaattctcgtgtagtaaataatgtaaatatggaagaaattcctgatttg
agtaagtaa
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