KEGG   Candidatus Liberibacter americanus: lam_461
Entry
lam_461           CDS       T02902                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lar  Candidatus Liberibacter americanus
Pathway
lar03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    lam_461 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lar03021]
    lam_461 (rpoC)
   03400 DNA repair and recombination proteins [BR:lar03400]
    lam_461 (rpoC)
Enzymes [BR:lar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     lam_461 (rpoC)
Transcription machinery [BR:lar03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     lam_461 (rpoC)
DNA repair and recombination proteins [BR:lar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      lam_461 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RnfC_N
Other DBs
NCBI-ProteinID: AHA27821
UniProt: U6B7I1
LinkDB
Position
526055..530239
AA seq 1394 aa
MQQGIMRFFNPWTDDKDFDSIRISIASPEKILSLSYGEIKKPETINYRTFKPERDGLFCA
RIFGPMADYECLCGKYKRMKYKGVVCEKCGVEVTLSSVRRDRMAHIRLAAPVAHPWFLKS
LPSRISILLDMSLKNIERVLYFESYVVVDPGLSPLEKYQLLTEEEYLQALNDYSEDQFIA
MMGADAIRELLISLDLEKLAADLRSSLIKDVSIFRRKKTMKRLKIVDNFLNSGNRPEWMI
MTVIPVIPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLIRLNGLHAPDIIVRNEKRM
LQEAVDALFDNGRHKRVITGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAG
PELLLHQCGLPKLMALELFKPFLYAQLEKKGCVSTVKQAKKFVEKKKPEVWDALEEVVSQ
SLILLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCEGYNADFDGDQMAVHVLLSLEAQL
EARVLMMSTNNILHPASGVPVVVPSQDMVLGLYYLSISHKGDPGEGMSFADVGEVYHALE
NKVVTLHSRILGRYTSVDADGNKVSKVYDTTPGRMIIGEILPCHYKISFDICNQEMTKKN
ISSMVDTVYRNCGQENTVVFCDRLMRLGFSYACSSGISFGKDDIIVPESKEKIIAEADKM
VKDYEQEYNDGLITRGEKYNKVVELWGKATDKVTEEMMARMKEVEFDPETGRQKPMNSIF
MMSRSGARGSIHQMRQLGGMRGLIAKPSGEIIETPIRSHFKGGLDVFEFFKSNIGGRKGL
LDVVMRTASSGYLSRRLVDVNQNCVITQVDCGTDRGLTVRSIVDSGQVVSSLGSRILGRT
TIENIINPLTNECIIEAGKLILESHVADIEELGIRSVRIRSPLTCESSKGICAFCYGRDL
SRGKIINVGEAIGIIAAQSIGEPGTQLTMRTFHLGGAATVVDRSFIESSCDGKVKIKNCT
VCLNSEQDLISMGRNTTLQVLDSSGEEQSSYRIMYGAKLFVNNGDSVKCGQRISEWDPHT
SPIITEVSGTVEFEDLVDGLSVIESIGESTGIAKRKVIDWRFSTHGQNLKPAIVVKDENG
DVIKFARGSDARWFLPVDAILSVTPGQKVSVGDVLARSPISSAKTKDITSGLPRVAELFE
ARRPKDNAMLAEISGTIRIKRNYKNKSRVLIEPFDESLEPVEYFIPKNKHFYLQDGDTVE
KGDYIVEGNPAPHDILRIKGVEALASYLLNEIQEVYRLEGVVINDKHIEVVIRQMLQKVE
IIDVGDSEYVLGDNIDRVEVEAINKELIHHKKKPVVFSPVLQGITKAALQTKSFISAASF
QETTKVLTEAAIAGKVDMLEGLKENVIVGRLIPAGTGALLREKRRIAMHRDQMIVKEKNN
SSNNTESNDKYVKI
NT seq 4185 nt   +upstreamnt  +downstreamnt
atgcaacaagggatcatgagattttttaatccatggacagatgataaagatttcgattct
attaggatttcaattgcttctccggagaagatattatctttatcttatggtgagataaag
aagccagaaacaattaattatcgtacttttaagcctgagagagatggtttattctgtgct
aggatttttggccctatggctgattatgagtgtttatgcggaaagtataaacgcatgaag
tataagggtgttgtttgtgagaagtgtggtgttgaggtaacattatcgtctgttcgtcga
gatcgtatggctcatattcgccttgctgccccagttgctcatccttggtttcttaagtct
ttaccatcgcgtatatcaatattacttgatatgtccttgaaaaacatagagcgagttctt
tattttgaaagttatgttgttgttgatcctggtttgtccccattggaaaaatatcagctt
ttaacagaagaagagtatttgcaggctttaaatgattatagtgaagatcagtttatagct
atgatgggagctgatgcaatacgtgagcttttgatttcattggatcttgagaaattggct
gctgatttgcgctctagtttgattaaagacgtttctatttttaggcgaaagaaaacaatg
aaacgtctgaagatagttgataattttttaaattctgggaatcgtcctgaatggatgatt
atgactgttattcctgttattccaccagatttgcgtccattagttgctcttgattttggt
cgttttgctgcttctgatcttaatgatttgtatagacgtgttattggtagaaacaatcgt
ttgattaggttaaacggcttgcatgctccagacattatcgtaagaaatgaaaaaaggatg
cttcaagaagcagttgatgcattgtttgataatggtcgtcataagcgtgtgataactggt
gcaaataggcgtcctctgaaatctctatctgatatgttaaagggtaagcagggtcgtttt
agaacaaatcttctcgggaaaagagttgattattctggtcgttctgtcatcgttgcaggt
ccagaattgttgttgcatcaatgtggtttgccgaagttaatggcgcttgagttgtttaag
cctttcttatatgctcaattagagaaaaaaggttgtgtttctactgttaaacaggccaaa
aaatttgttgaaaagaaaaagcctgaagtttgggatgctcttgaagaagtggtctctcag
agccttattttgcttaatcgtgcaccgagtttgcatcgtttgagtatgcaagctttcgag
cctaaaattataagcgggaaagctatccagctccatcctttggtttgtgaagggtataat
gctgactttgatggtgatcaaatggctgtacacgtgttgctttcacttgaagcgcagtta
gaagcgcgtgtattgatgatgtccactaataatattttacatccagctagtggtgtgcca
gttgtggttccttcacaagacatggttttgggtttatattatttgtctatttcacataaa
ggtgaccctggtgaggggatgtcttttgctgatgtaggcgaggtctatcatgctcttgaa
aataaagtagttactttacattccaggatacttggaagatacactagtgttgatgcagat
ggtaataaggtatcaaaagtttatgatacaactccaggccgtatgataataggcgaaata
ttgccttgtcattataaaatctcatttgatatttgtaatcaagaaatgactaagaaaaac
atttcatctatggttgatacagtttatcgtaattgtggtcaggaaaatacggttgttttt
tgtgatcgtcttatgcgcttaggtttttcttatgcttgttcttctggtatttccttcggt
aaagatgatataattgttcctgaatctaaggaaaagattattgcagaagctgataagatg
gtaaaagattatgagcaggaatataatgatggtctcattactcggggagaaaaatataat
aaggttgttgaactttggggtaaggcaactgataaagtgaccgaagagatgatggctcgg
atgaaagaggttgaattcgatccagaaactggtcgtcaaaagcctatgaattctatattt
atgatgtctcgttctggtgcacgtggttctatacatcagatgcgtcagcttggtggtatg
agaggattgatagcaaaaccatctggagaaattattgaaacacctattcgttctcacttt
aaaggtggccttgatgtttttgagttctttaaatcaaatattggtggtcgtaaaggattg
cttgacgttgttatgagaaccgctagctctggttatttgagcaggagacttgtcgatgtt
aatcagaattgtgttatcactcaagttgattgtggaactgatagaggtttgactgttaga
tcaattgttgattctggacaggttgtctcttctttgggtagtagaattttagggcgtact
actattgagaatattattaatccattaacaaatgagtgtattattgaagctggtaaattg
atacttgaatctcatgtcgctgatattgaggagcttggtattagatctgtcaggattcgt
tcacctttgacttgtgaatctagtaaaggtatttgtgccttttgttatggtcgtgatcta
tctagaggaaagattattaatgttggtgaagctattggtattattgctgctcagtctatc
ggagagcctggtactcagttaactatgcgtacctttcaccttggaggggcggcaaccgtt
gttgacaggtctttcatagagtcttcttgtgacgggaaagtaaaaattaaaaattgtact
gtatgtttgaattctgaacaagatctcatatcaatggggcgcaataccacacttcaggtt
ttggattcttctggtgaagaacaatcttcgtatcgtattatgtatggtgcaaagcttttt
gttaataatggtgattctgtcaagtgtggacaacgtatctcagaatgggatccgcatact
tctccaataataacagaagtttctggaacagtagaatttgaagatcttgtagatggacta
tctgtaattgagagtattggtgaatctacaggtatagctaagcgtaaagttatagattgg
cgttttagcactcatggtcagaacttaaaacctgcaattgttgtaaaagatgaaaatggt
gatgttataaaatttgctcgtggttctgatgctagatggtttttgccagtagatgcaatc
ctttcagttacacctggacaaaaagtttctgtaggcgatgtgcttgctcgttcaccaatt
tctagtgctaagacaaaagatattacaagcggattgccacgtgtggctgagctttttgag
gcacgtcgtccgaaagataatgctatgttagcagaaattagtggtactatcaggatcaag
cgtaattataaaaataaatctcgagtattaattgagccttttgatgaaagccttgaacca
gttgaatattttattccaaaaaacaagcatttttatctgcaagatggcgatactgttgaa
aaaggtgattatatagttgaaggtaatcctgcacctcatgatattttacgtattaaaggt
gtagaagctttggcttcttatttgcttaatgaaattcaagaggtttatcgtcttgaggga
gttgtaattaacgataagcatatagaagtagttattcgtcagatgttgcaaaaagttgag
attattgatgtaggtgatagtgaatatgtcttaggtgataatatagatcgggttgaagta
gaagcgattaataaagaacttattcatcataaaaagaaacctgtcgttttttctccagtg
ttacagggaattactaaggctgctctgcaaacaaaatcctttatatctgctgcttcattc
caagaaacaacaaaggttcttacagaagcagctattgcaggaaaagttgatatgctagag
ggactgaaggaaaatgttatagttggtcgtttaattcctgctggaacaggagctctctta
agagaaaaacgtcgtattgctatgcatagagatcagatgattgtcaaagaaaaaaataat
tcttcgaataatactgaatcaaatgataaatatgttaaaatatga

DBGET integrated database retrieval system