Candidatus Liberibacter americanus: lam_578
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Entry
lam_578 CDS
T02902
Name
(GenBank) Metallo-beta-lactamase family protein, RNA-specific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lar
Candidatus Liberibacter americanus
Pathway
lar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lam_578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lar03019
]
lam_578
Messenger RNA biogenesis [BR:
lar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lam_578
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AHA27925
UniProt:
U6B4V3
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All DBs
Position
658233..659909
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AA seq
558 aa
AA seq
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MVERKDLVFLPLGGVGEIGMNMYLYGCGVPGKRKWIMVDCGVAFPRDDSIGVSLVFPDIT
FLLKERKNLMAIIITHAHEDHYGALHDLWVLLNVPVYASPFAIALLEAKSFYNHVPNNII
CKPFKVGDKIDIHPFSIEPLRVNHSIPESMALIIRSPLGNIVHTGDWKVDDTAILGDTTD
QKALCAIGNEGVLALMCDSTNAMCDESYITEKDVTNGLYNIIEKASGCVAITTFSSSISR
ICSIIDVAEKLGRYVLLLGTSLKRVVNVAIDIGLIKKDQKFLSEEEFGSYPRNKLVIILT
GSQGEPRSALSQLSRNGMCNISLCENDLVIFSSRAIPGNETAIGDVKNRLIEQGVKIIVG
DLDNAVHVSGHPYRNDLKKMYEWVRPQIIVPIHGEAMHLVSQRDLALEFGVYNVPFIRNG
HMLRLSPSPVEIIDEVVHGRFFKDGHLVGKSEDLGISKRRKLSFAGHLSVNIVVDNYYDI
VGVPEIIDIGLPFYCADGTKLSKILLKTIITTVINMNKSSRKDLKLLRESIKKSLRSAIN
NIWGKKPIVTVFVNKISY
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggtagaacgaaaagacttggttttcttgccacttggtggtgtcggtgagattggaatg
aacatgtatctttatggatgtggagttcctggaaaacgcaaatggataatggttgattgt
ggagtagcatttccaagagatgattccataggagtaagtttggttttcccagatattacg
tttctactgaaagaacgtaagaatcttatggctattattattacgcatgcacatgaggat
cattatggtgctttacatgatttatgggtattattaaatgttccagtatatgcttctcct
tttgctattgctcttttagaggctaaaagtttttacaatcacgttcctaataatattata
tgtaaaccatttaaagtaggagataagattgatatacatcctttttctattgaacctttg
cgagtgaatcattcaattccagaatctatggcattaattattcgttctccattaggaaat
attgtgcacacaggtgattggaaagttgatgatactgctatactcggagatactacagat
cagaaggctttatgtgcaataggtaatgaaggtgtcttggcattaatgtgtgattcaact
aatgcaatgtgtgatgaatcatatattacagaaaaggatgtaactaatgggctttataat
ataattgaaaaagcttcaggatgtgtcgcaattacaactttttcatcaagtattagtcga
atttgtagtataattgatgttgctgaaaaactaggtcgttatgttttgctacttggaact
tctttgaaaagagtagtaaatgttgctattgatattggtttaattaaaaaagatcaaaaa
tttctttcagaagaagaatttggttcttatcctcggaataaattagttattatccttact
ggaagtcagggtgagccacgttcggctttatctcaattatcacgtaatggaatgtgtaat
atatcattatgtgagaatgatttagttatattttcatctcgagccattcctggtaatgaa
actgcaataggtgatgtaaagaataggttgatagaacaaggtgttaaaataattgttgga
gatttagacaatgcagttcatgtttcaggtcatccatatcgtaatgatttgaaaaagatg
tatgaatgggttcgccctcaaattattgtgccaattcatggagaagctatgcatcttgtt
tctcaaagagatcttgccttagagtttggtgtttataatgttccatttattagaaatggt
cacatgttgcgtctttccccaagtcctgttgagattattgatgaggttgttcatggaaga
ttttttaaagatggtcatttggtaggtaaaagtgaagatttaggtatctctaaaagaagg
aagctttcttttgcggggcatttatccgtcaatatagttgttgataattattatgatata
gtaggtgtgcctgaaattattgacataggattacctttttattgtgctgatggaacaaaa
cttagcaagattttattaaaaacgattattacgacagttattaatatgaataaatctagt
cgtaaagatttgaaattgctgcgagaatcgattaagaaatctttgcgttctgccataaat
aatatttggggtaaaaagcctatagtgactgttttcgttaataagatatcttattaa
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