Candidatus Liberibacter americanus: lam_611
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Entry
lam_611 CDS
T02902
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor - superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lar
Candidatus Liberibacter americanus
Pathway
lar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lam_611 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lar03400
]
lam_611 (mfd)
Enzymes [BR:
lar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lam_611 (mfd)
DNA repair and recombination proteins [BR:
lar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lam_611 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
DUF3638
DUF3195
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHA27958
UniProt:
U6B5G2
LinkDB
All DBs
Position
703906..707409
Genome browser
AA seq
1167 aa
AA seq
DB search
MNSGFDIAKIIKDYNKNINISHVVPGSEAFVIAEIAISGQSVVYIDSDERSLLKIKEIIK
FINPEINVMIFPSWDCLPYDRVSPSPNIMADRFACFSHFLSFNPQKETCIILTTVSALML
RSIYPIMSDSYKFLLRSGDKIEMTNIINKLEINGFQRVNTVYEVGEYAVRGGIIDVYVPS
EKNPVRLDFFGDILEGIRLFDPDNQLTIKKISSIEINTLSEVVLNPENISRFRENYLSNF
GAVNQEDSLYTSISQGRRYPGMEHWLPLFHKNLDTVFTYLADFYIVANDIIKDAAYKRSQ
LIQDYYEARCSYFADKNKSVVYKPILPEMLYLDYQQFNSMLENSKKLIYFSAFNQINTSK
TSVFNLNVNIGKSWVTSSLQKNELHENYDVGRFDDFIRYINNKYQIGKKTLLVASSKGAL
QHLKQILEENRLKKIKIINSLQHLYYISEGEIAATVIPIDQGFETKNMILVTEKDLLGTS
VIKRSNRKKSIINSFFESSSIEEGSFIVHTEHGIGQFIRLCTIHVAGSLHDCLELHYADN
VKLFLPVENIDLISRYSEENSNIVLDKLGGVSWQTRKSQLKKRLKDLAQKLIDIAAKRSL
NNVPAITVPEDIYAKFVQKFPYIETEDQAKSIEAIINDLASGHPMDRLICGDVGFGKTEV
VLRAAFIAVMNGLQVVVIVPTTLLARQHFRVFSERFKDFAVRIVSISRFIRAKEASVYKR
EITEGKVDIIIGTHSLLSPRIKFSNLGLIIIDEEQHFGVKHKEALKETNPGVHVLTLSAT
PIPRTLQLAITGVRELSLINSPPIDRIPCRISVSVFDPLIIRETLMREHYRGGQSFYVSP
RLSDLDKCYDFLQELVPELKIAIVHGKIPSKVLEETMNSFYNGHYNILLSTSIIESGLDL
PTANTIIVHRADMFGLSQLYQLRGRVGRSKISSFALFLIPENKTLTESAQKRLRIIQSLD
TLGVGFKLASHDLDIRGTGNILGEEQSGHIKEVGFELYQKMLEDTILSVKGQEELIDSNW
SPQILIEASVLIPESYIADVSLRLSLYRRLGNIADQEDISNFKAEMIDRFGALPIEVVHL
LKVVILKSLCKTANIEKMDIGRKGIVVHFRDNKFSNPVALLNYISLQNKKVIIRPDQSIV
FDRFLPDTDKKFTEAKRIVLHLIKLIE
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaactctggatttgatattgcaaaaattattaaggattataataagaatataaatata
tctcatgttgttcctggttcggaagcttttgttattgcagaaatagcaatttctggtcag
tctgtcgtatatatcgattcagatgaacgatctttgctaaaaattaaggaaattattaaa
ttcattaatcctgaaattaatgttatgatttttccatcttgggattgtcttccatatgat
cgagtttcaccttctcctaatattatggcagatcgttttgcttgtttttcacattttctt
tcctttaatcctcaaaaagaaacatgcattatactaacaacagttagtgctttgatgttg
cgttctatttatccaattatgtctgatagttataagtttttgcttcgatctggagataag
atcgaaatgacaaatattataaataaattagaaattaatggattccaacgtgtaaatact
gtctatgaagttggtgaatatgccgttagaggaggtattattgatgtctatgttccgtct
gaaaaaaatccagtacgtttagatttttttggagatatactagaaggcattcgtcttttt
gatcctgacaatcagcttacgattaaaaaaatttcttctattgaaattaatactttaagt
gaggttgtacttaatcctgaaaatataagtcgtttccgtgaaaattatctttcaaatttt
ggggcggtaaatcaggaagatagtctttatacatctatttctcaaggacgacgatatcct
ggaatggaacattggcttcctttatttcataaaaatctagatacagtttttacatattta
gctgatttttatatagtagccaatgatattatcaaggatgcagcttacaaacgatctcaa
ttgattcaggattattacgaagctagatgcagctattttgctgataagaataaatctgtt
gtatataagccaattttgccagaaatgctgtaccttgattatcagcaatttaattcaatg
ttggaaaattctaaaaaattgatttatttttccgcctttaatcaaatcaatacatctaaa
actagtgtttttaatcttaatgttaatataggaaaatcatgggttacatcttctttacaa
aaaaatgaattacacgaaaattatgatgttgggagatttgatgatttcataagatatatc
aataataagtatcaaataggaaaaaaaacgctattagtggcttcttcaaagggggctttg
caacatttgaaacagattttagaggaaaatagattaaaaaaaatcaaaattattaattct
ttacagcatctatattatatatccgaaggtgaaattgcagcgacggttattcctattgat
caaggatttgaaacaaaaaatatgattcttgttactgaaaaagatcttttgggaactagc
gttataaaacgatctaatcgtaaaaaatctattattaattctttttttgaatcttcaagt
atagaagaaggatcctttatagttcatacagagcatggtatagggcaatttattcgctta
tgtaccattcatgtagcaggatcattacatgactgtcttgagcttcattatgctgataat
gtaaaattatttttgcccgttgaaaacattgatcttatatcacgatatagcgaagaaaat
tctaatattgttctggataaattaggtggtgtttcttggcaaacacgaaaatctcaatta
aagaagcgtcttaaagatttggcacaaaaacttattgatattgcagctaaaagatccctt
aataatgttcctgctattacagtaccagaagatatttatgcaaaatttgtacaaaaattt
ccttatatagagaccgaagatcaagctaagtcaattgaagctattattaatgatttggca
agtggtcatcctatggatagattgatttgtggcgatgtaggttttggtaaaacggaagtt
gtattacgtgctgcttttattgcggttatgaatggattacaagttgttgtaatagttcca
actactttgcttgctcggcagcattttcgtgtattctctgaacgtttcaaagattttgcg
gttcgtatagtaagtatttcaagatttattagagcaaaagaagcatctgtttataagcgt
gaaataacagaaggaaaagttgatattattattggtactcattctttattgagcccacga
attaaattttctaatcttggtttgattattattgatgaggaacagcattttggagtgaag
cataaagaagcgttaaaggaaactaacccaggtgttcatgtattaactctttctgctaca
ccgattcctcgtactttacagctcgctataactggtgttcgtgaattatcattgattaac
agtcctccaattgatcgtattccttgtcgaatttcagtttcagtctttgatccgcttata
attcgtgaaactttaatgcgtgaacactatcgaggtggtcaaagcttttatgtatctcca
cgtttatcagatttagataaatgttatgatttcttacaagagctagttccggaattaaaa
atcgctattgttcatggaaaaattccttctaaagttttagaagaaacaatgaattctttt
tataatggtcattataatattttactatccacttcaatcattgagtctggattagatttg
ccaacagcaaatacaattattgtacacagggccgatatgtttggattatctcaattatat
cagcttcgtggtagggtaggtcgttcaaaaatttcttcatttgctttatttttgatacca
gaaaataaaactttaacagaatctgctcaaaaacgtcttagaattatccaatctcttgat
acacttggggtaggttttaagttagctagtcatgatcttgatattcgtggaacaggtaat
attttaggagaagaacagtctggccatattaaagaagtaggttttgaattatatcaaaaa
atgctggaagatactattctatcagttaaaggacaagaagaattaattgatagtaattgg
tctccacaaattttaatagaagcatcagtgctgataccagaaagttatattgctgatgtt
agtttgcgtcttagcctatatcgtcgtttaggaaatattgctgatcaggaagatattagt
aactttaaagcagagatgatagatcgttttggggctttgccaatagaagtagttcatcta
ttaaaagtagttatactcaagtcactttgtaaaactgctaatattgaaaaaatggatata
ggtagaaaaggtatagttgtacatttccgtgataataaatttagtaatccagtagcgtta
cttaattatatttctctccaaaataaaaaagtaattattcgtcctgatcaaagcattgtt
tttgatcgttttttaccagatactgataagaaatttacagaagcaaaacgtattgtatta
catttaattaagttgatagaatag
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