Lysobacter arenosi: HIV01_002370
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Entry
HIV01_002370 CDS
T07237
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lare
Lysobacter arenosi
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lare03016
]
HIV01_002370 (rnd)
Enzymes [BR:
lare01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HIV01_002370 (rnd)
Transfer RNA biogenesis [BR:
lare03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HIV01_002370 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QSX75415
LinkDB
All DBs
Position
complement(470047..471150)
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AA seq
367 aa
AA seq
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MPAAWITDPAALRAHFATPPARIGLDTEFIRERTFWPQLALVQISIERGDDEPEILLVDP
LAPGILAALTPILADESIVKVMHSPSEDLVAFRHSCGVVPKPLFDTQLAAALAGIGAGLG
YQKLVEQLTGVTLAKGETRSDWLRRPLSPAQLEYAADDVRHLFEMHDQLQHRLQELGRSE
WLAEDAARTVINAENEGPERWPHATMRSAQFLERDAQLRLLRLLRWRDTYARDNDRPRNW
ILDNELAVNLARNPPMDRAGLQRDLDAHPKAPRKLGDAVWAALNTPLPDEADAPDANEGD
NRDKQRLRKLQDAVAARSAELGLPDGVLASRRWLEALLDRGEWPDALSGWRREALEAGIA
PLLAGQD
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgcctggatcaccgaccccgccgccctgcgcgcccactttgctacgccgccg
gcgcggatcggactggacaccgaattcatccgcgaacgcaccttctggccgcaactggcg
ctggtgcagatttcgatcgagcgcggcgacgacgagcccgagatcctgctggtcgacccg
ctcgcgccgggcatcctcgccgcgctgacgccgatcctcgccgacgaatccatcgtcaag
gtgatgcacagccccagcgaagacctggtggccttccgccattcctgcggcgtggtgccc
aagccgctgttcgacacccagctggccgccgcgctggccggcatcggcgccggcctgggc
tatcagaagctggtggaacagttgaccggcgtcaccctggccaagggcgagacgcgctcg
gactggttgcgccgcccgctgtcgccggcccagctcgagtatgccgccgacgacgtgcgc
cacctgttcgagatgcacgaccagctccagcaccgtctgcaggaactgggtcgaagcgaa
tggctggccgaggacgccgcacgcacggtgatcaacgccgagaacgaaggcccggaacgc
tggccgcacgcgaccatgcgcagtgcccagttcctcgaacgcgacgcacagctgcgcctg
ctgcgcctgctgcgctggcgcgacacctacgcccgcgacaacgaccgcccgcgcaactgg
atcctcgacaacgaactggccgtcaacctcgcccgcaacccgccgatggaccgcgccggc
ttgcagcgcgatctcgacgcgcacccgaaggcaccgcgcaagctcggcgatgcggtatgg
gcggccttgaacaccccgctgcccgatgaagccgacgcccccgacgccaacgagggcgac
aaccgcgacaagcagcggttgcgcaaactgcaggacgcggtggccgcgcgcagtgccgag
ctgggattgcccgatggcgtgctcgcctcacggcggtggctcgaggcgctgctcgatcgc
ggcgagtggccggatgcactgtcgggctggcgccgtgaggcgctggaggcggggattgcg
ccgttgctggcggggcaggactga
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