Lysobacter arenosi: HIV01_003040
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Entry
HIV01_003040 CDS
T07237
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
lare
Lysobacter arenosi
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lare03009
]
HIV01_003040 (rimO)
Enzymes [BR:
lare01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HIV01_003040 (rimO)
Ribosome biogenesis [BR:
lare03009
]
Prokaryotic type
ribosomal protein modification factors
HIV01_003040 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
YajR_YAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QSX75529
LinkDB
All DBs
Position
626424..627773
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AA seq
449 aa
AA seq
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MSLANPKVGFVSLGCPKALVDSERILTQLRVEGYDIVQTYDDADVVVVNTCGFIDSAVTE
SLDAIGEAIAENGKVIVTGCLGKKPEQIREAHPGVLSISGPQDYGSVMSAVHAALPPKHD
PFLNLVPDTGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDQVLREAEKLAM
GGVKELLVISQDTSAYGVDVKYAQHEWRGKTYQTRMKALCEGLSELGIWTRLHYVYPYPH
VDDIIPLMAETGANGMRKLLPYLDIPFQHASPRVLKLMKRPGAVDKTLERIQRWRSIAPD
ITIRSTFIVGFPGETEAEFEELLDFLDEAQLDRVGAFAYSPVDGASANALPDPVPEEVKA
ERLARFMERQADISAAKLEAKVGTTQRCLVDALDGELAIARSMADAPEIDGLVQIQNGFM
AGLKPGEFVDVEIMGSDEHDLFGEVAFDD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtccctagccaatcccaaagtcggtttcgtcagcctcggttgccccaaggcgctggtc
gactccgaacgcatcctcacccagttgcgcgtggagggctacgacatcgtccagacctac
gacgatgccgacgtggtcgtggtcaacacctgcggcttcatcgactcggccgtgaccgag
tcgctggacgcgatcggcgaggccatcgccgagaacggcaaggtcatcgtcaccggttgt
ctgggcaagaagcccgagcagatccgcgaggcgcacccgggcgtgctgtcgatcagcggc
ccgcaggattacggcagcgtgatgagcgcggtgcacgcggcactgccgcccaagcacgat
ccgttcctgaacctggtgcccgacacgggcatcaagctgacgcccaagcactacgcctac
ctgaagatttccgaaggctgcaatcaccgctgcagcttctgcatcatcccgtcgatgcgc
ggcgacctcgtcagccgtccggtcgaccaggtgctgcgcgaggccgagaagctcgccatg
ggcggcgtcaaggaactgctggtgatctcgcaggacacctcggcctacggcgtcgacgtc
aagtacgcgcagcacgaatggcgcggcaagacctaccagacgcgcatgaaagcgctgtgc
gagggcctgagcgaactgggcatctggacccgcctgcattacgtgtacccgtatccgcac
gtcgacgacatcatcccgctgatggccgagaccggcgccaacggcatgcgcaagctgctg
ccgtacctggacatcccgttccagcacgccagcccgcgcgtgctcaagctgatgaagcgc
ccgggcgcggtcgacaagacgctcgagcggatccagcgctggcgctcgatcgcgccggac
atcaccatccgctcgaccttcatcgtcggtttccccggcgagaccgaggccgagttcgaa
gagctgctggacttcctcgacgaggcccagctcgaccgcgtcggcgcgttcgcctattcg
ccggtcgacggtgccagcgccaacgcgctgcccgatccggtgccggaagaggtcaaggcc
gagcgtcttgcgcgcttcatggagcgccaggcggacatttccgcggccaagctcgaagcc
aaggtcggcaccacccagcgctgcctggtcgacgcgctcgacggcgaactggcgatcgcg
cgctcgatggccgacgcgccagagatcgacggtctcgtgcagatccagaacggcttcatg
gccggcctcaagccgggcgagttcgtcgacgtcgagatcatgggcagcgacgagcacgac
ctgttcggcgaagtcgcgttcgacgactga
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