Lysobacter arenosi: HIV01_004020
Help
Entry
HIV01_004020 CDS
T07237
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
lare
Lysobacter arenosi
Pathway
lare03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HIV01_004020 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lare03400
]
HIV01_004020 (sbcB)
Enzymes [BR:
lare01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HIV01_004020 (sbcB)
DNA repair and recombination proteins [BR:
lare03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HIV01_004020 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HIV01_004020 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HIV01_004020 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QSX75700
LinkDB
All DBs
Position
complement(849564..851042)
Genome browser
AA seq
492 aa
AA seq
DB search
MPASFLFYDLETFGADPRTSRIAQFAAIRTDADLNQIDEPISFFVKPADDLLPSPGATMV
TGITPQHAMREGVNEAAAFAQIFEEMARPETCSLGYNSLRFDDEFVRYGFFRNFFDAYER
EWRGGNSRWDLLDVLRLAHALRPEGLVWPKREDGATSFRLEHLAEANGVREGDAHEALSD
VRALIGLARKLKAAQPRLWDYALKLRDKRYAATLMDVVAMTPLLNVSQRFPASRLCSAAV
LPIARHPHIDSRVIVFDLAQDPEPLLQLDAEAIAARLYTRTADLAEGEERIALKEVHSNR
SPALVAWDHLRAPDFERLQIDPAEVERRAARIREAGPALVEKVRQVFARERERVAPDQDA
SLYDGFIGDGDKRLFAQVRTTPPEALGEREFAFRDARLPGILFRYRARNWPQTLSAEERA
GWDEFRRQRLYTDTGLAEYGFDRFAAEIAELRTVHAAAPDKLALLDRLEAWGGDIAASLN
PVSASPVFEHSP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccagcttcctcttctacgacctggaaaccttcggcgccgacccgcgcacttcg
cgcatcgcccagttcgcggcgatccgcaccgatgccgatctcaaccagatcgatgagccg
atcagcttcttcgtcaagccagccgacgacctgctgccgtcgccgggcgcgacgatggtc
accggcatcacgccgcagcacgccatgcgcgagggcgtcaacgaggctgccgcgttcgcc
cagatcttcgaggagatggcgcggccggagacctgcagcctgggttacaactcgctgcgt
ttcgacgacgagttcgtccgctacggcttcttccgcaacttcttcgacgcctacgagcgc
gagtggcgcggcggcaattcgcgctgggacctactcgacgtgttgcgcctcgcccacgcc
ctgcgtccggaaggcctggtgtggcccaaacgcgaggatggcgccacctcgttccgcctc
gaacacctggccgaagccaacggcgtgcgcgagggcgatgcgcacgaagcgctctccgac
gtgcgcgcactgatcggcctcgcccgcaagctcaaggccgcgcagccgcgcctgtgggac
tacgcgctaaagctgcgcgacaaacgctacgcggcgaccctgatggacgtggtggcgatg
actccgctgctcaacgtctcccagcgtttccccgccagccgcctgtgctcggcggcggtg
ctgcccatcgcgcgccacccgcacatcgacagccgggtgatcgtgttcgacctggcgcag
gatcccgagccgctgttgcagctcgatgccgaagccatcgccgcacgcctgtacacgcgc
acggccgacttggccgaaggcgaggaacggatcgcgctgaaggaagtgcacagcaaccgc
agcccggccctggttgcctgggatcacctgcgggcgccggatttcgagcgcctgcagatc
gaccccgccgaagtggagcggcgtgcggcgcggatccgcgaggcgggcccggcgctggtg
gagaaggtccgccaggtgttcgcccgcgagcgcgagcgggtcgcacccgaccaggatgcc
tcgctctacgacggcttcatcggcgacggcgacaagcgcctgttcgcacaggtacgcact
acgccgcccgaggcactgggcgaacgcgagttcgcattccgcgatgcgcgattgccaggc
atcctgttccgttaccgcgcgcgcaactggccacagaccctgtcggccgaagagcgtgcg
ggctgggacgagttccggcgccagcgcctctacaccgacaccggactggccgagtacggc
ttcgaccgttttgctgccgagatcgccgagctgcgcaccgtccacgccgccgcccccgac
aagctggccctgctcgaccgcctggaagcctggggcggtgacatcgcggccagcctgaac
cctgtctctgcgtcccccgtgttcgaacactcgccatga
DBGET
integrated database retrieval system
